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The map label for this gene is syd

Identifier: 218710353

GI number: 218710353

Start: 2556058

End: 2556603

Strand: Reverse

Name: syd

Synonym: VS_2389

Alternate gene names: 218710353

Gene position: 2556603-2556058 (Counterclockwise)

Preceding gene: 218710359

Following gene: 218710352

Centisome position: 77.49

GC content: 44.87

Gene sequence:

>546_bases
ATGACTCAACGCGCTCAAGACGCACTACTTTCTTTCAGTCAGCGATACGTTGACGCGTGGCAGCAGCAACACCAAAGCTT
ACCTCGTAATGAGGAGTTGGTGGACATTGTATCGCCATGCGTAGAAGAAAAGAGTGGTGATGCCGTGTTGTGGAAACACT
ATCCACGTGAGCAATTCGCAGATTTCACCAATGTTGAAACGGGTATTGAGTTGACTCTGCATGAAGACGTTAAGACTTTC
TACGGCGCACAATTTAGTGCGGATATGAACGCGACTTTTGATGGTAACGAACTGACTTTGTTACAGATTTGGAGTGATGA
CGATTTCGAATGCCTACAAGAAAACATCTTAGGTCACCTAGTGACTCAGCGTCGTTTGAAGCTAAAACCAACGGTTTTCA
TTGCCGCGACTGATGCTGAACTGGATGTTATCTCTATCTGTAACCTAACGGGTAACGTAATCCTAGAGCGCTTAGGCACC
AAAAATCGTGATGTACTAGCCGAGACATTGGCAGAATTTTTAGAAAAGCTACAACCAGCGGTATAA

Upstream 100 bases:

>100_bases
CGATTTTACTGAATCCCCATTACCCTGTCATTAAGTCATCGCTTAATCGGCACGGAAAGGGCTCGGATTCTATTTATTAT
TTTGTGTTTAGGAGATTTTC

Downstream 100 bases:

>100_bases
ATAGATGTACGTACTAGAACTTCAATTTGAGTGTTTTGATAACACAACGGTAAGCGCTGTCGATAAGGCGGTTAATGGCT
TAATGGATGCACTTCGTTAT

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTQRAQDALLSFSQRYVDAWQQQHQSLPRNEELVDIVSPCVEEKSGDAVLWKHYPREQFADFTNVETGIELTLHEDVKTF
YGAQFSADMNATFDGNELTLLQIWSDDDFECLQENILGHLVTQRRLKLKPTVFIAATDAELDVISICNLTGNVILERLGT
KNRDVLAETLAEFLEKLQPAV

Sequences:

>Translated_181_residues
MTQRAQDALLSFSQRYVDAWQQQHQSLPRNEELVDIVSPCVEEKSGDAVLWKHYPREQFADFTNVETGIELTLHEDVKTF
YGAQFSADMNATFDGNELTLLQIWSDDDFECLQENILGHLVTQRRLKLKPTVFIAATDAELDVISICNLTGNVILERLGT
KNRDVLAETLAEFLEKLQPAV
>Mature_180_residues
TQRAQDALLSFSQRYVDAWQQQHQSLPRNEELVDIVSPCVEEKSGDAVLWKHYPREQFADFTNVETGIELTLHEDVKTFY
GAQFSADMNATFDGNELTLLQIWSDDDFECLQENILGHLVTQRRLKLKPTVFIAATDAELDVISICNLTGNVILERLGTK
NRDVLAETLAEFLEKLQPAV

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the Cytoplasmic side of the inner membrane, probably via secY (By similarity)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family

Homologues:

Organism=Escherichia coli, GI1789157, Length=172, Percent_Identity=49.4186046511628, Blast_Score=178, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYDP_VIBSL (B7VIV3)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002417974.1
- GeneID:   7161927
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_2389
- HOGENOM:   HBG298615
- OMA:   FANVEHA
- ProtClustDB:   PRK04968
- HAMAP:   MF_01104
- InterPro:   IPR009948

Pfam domain/function: PF07348 Syd

EC number: NA

Molecular weight: Translated: 20601; Mature: 20470

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQRAQDALLSFSQRYVDAWQQQHQSLPRNEELVDIVSPCVEEKSGDAVLWKHYPREQFA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHH
DFTNVETGIELTLHEDVKTFYGAQFSADMNATFDGNELTLLQIWSDDDFECLQENILGHL
HHCCCCCCEEEEEHHHHHHHHCCCCCCCCCCEECCCEEEEEEEECCCCHHHHHHHHHHHH
VTQRRLKLKPTVFIAATDAELDVISICNLTGNVILERLGTKNRDVLAETLAEFLEKLQPA
HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
V
C
>Mature Secondary Structure 
TQRAQDALLSFSQRYVDAWQQQHQSLPRNEELVDIVSPCVEEKSGDAVLWKHYPREQFA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHH
DFTNVETGIELTLHEDVKTFYGAQFSADMNATFDGNELTLLQIWSDDDFECLQENILGHL
HHCCCCCCEEEEEHHHHHHHHCCCCCCCCCCEECCCEEEEEEEECCCCHHHHHHHHHHHH
VTQRRLKLKPTVFIAATDAELDVISICNLTGNVILERLGTKNRDVLAETLAEFLEKLQPA
HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA