Click here to switch to the map view.

The map label for this gene is yfdH [C]

Identifier: 218709131

GI number: 218709131

Start: 1205082

End: 1206038

Strand: Direct

Name: yfdH [C]

Synonym: VS_1138

Alternate gene names: 218709131

Gene position: 1205082-1206038 (Clockwise)

Preceding gene: 218709126

Following gene: 218709132

Centisome position: 36.53

GC content: 46.08

Gene sequence:

>957_bases
CTGTCTATCATTGTGCCTTTTTACGATGAACAAGAGGTATTGGAAGAGTTCCACTCTCGCCTTACCAAGGTGCTTGATAG
CTTGCCCATCAAGAGTGAAATCGTTTATGTCGACGACGGTAGCAAAGACAGCAGCTTGGAGTTGGTGAGTTCATTCACTT
CAATCAATAGCTCAATTTCTGTTATCGGTTTAAGCCGTAATTTTGGCAAAGAATCAGCGATGAGCGCAGGCCTTGAGCAC
TGTCGTGGACAAGCGGTGATTTTGCTAGACGCTGACCTACAAGATCCACCTGAGCTTATTCCGCAAATGATTGCTAAGTG
GCGCGAAGGTTATGACGTCGTCAATATGCAGCGCAGCCAGCGTGATGGTGAAACATGGTTTAAGAAGTTTTCAGCAGCGA
GCTTTTACAAAGTCATGAACGTGGCTGCGAAGATTGATGTTCCTGAGAATGTGGGTGATTTTCGACTGTTAAGCCGAGAG
GTTGTCGACCATATCAATCAGCTTCCAGAACGTAACCGCTACATGAAAGGCATTTTTTCATGGCCGGGTTTCCGACAAGC
GACACTCCAATTTAAGCGTGATGCTCGCTTCTGTGGCGAGACCAAGTGGAACTATTTGAAACTCATCGGATTGGCGATGG
ATGGCATCACATCATTCTCTATCCGCCCACTGCGTATTGCGACGGCAGTTGGTGGATTAGTGGCGCTTACTGCTTTCGTG
TATGGCGTCTTCATCGTGTTCAAAACCATGATGTTTGGTGAGCCAATTACGGGTTATCCGTCAATGATGGTCGTGCAACT
TGCACTTGGCGGAATCCAACTGTTGAGTATTGGTTTAATGGGGGAGTACATAGGTCGTATTTTCATCGAAACCAAGAATC
GCCCTCTTTATCTGATCCAATCGGTCGTTGATACACCCGCATTGAAAACACATTTTAAATTAGAGGAATCAGCATGA

Upstream 100 bases:

>100_bases
TAGATTGGATTCAGATTAAAAAATAGAAGAACGTATTATGTCTGAACTTCATATAAGCCGCCCTAAGATATCTACATCGC
AGATCAACCCTGCGGTTTCT

Downstream 100 bases:

>100_bases
GTCTGAACAGAACGCATCTATGGTATTTGTTGGCTTTTGCACTAGTTTTAAGGCTTTTATCTTTGGCGACTTATCCGTTA
ATGGACACCACTGAAGCGCG

Product: putative glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MSIIVPFYDEQEVLEEFHSRLTKVLDSLPIKSEIVYVDDGSKDSSLELVSSFTSINSSISVIGLSRNFGKESAMSAGLEH
CRGQAVILLDADLQDPPELIPQMIAKWREGYDVVNMQRSQRDGETWFKKFSAASFYKVMNVAAKIDVPENVGDFRLLSRE
VVDHINQLPERNRYMKGIFSWPGFRQATLQFKRDARFCGETKWNYLKLIGLAMDGITSFSIRPLRIATAVGGLVALTAFV
YGVFIVFKTMMFGEPITGYPSMMVVQLALGGIQLLSIGLMGEYIGRIFIETKNRPLYLIQSVVDTPALKTHFKLEESA

Sequences:

>Translated_318_residues
MSIIVPFYDEQEVLEEFHSRLTKVLDSLPIKSEIVYVDDGSKDSSLELVSSFTSINSSISVIGLSRNFGKESAMSAGLEH
CRGQAVILLDADLQDPPELIPQMIAKWREGYDVVNMQRSQRDGETWFKKFSAASFYKVMNVAAKIDVPENVGDFRLLSRE
VVDHINQLPERNRYMKGIFSWPGFRQATLQFKRDARFCGETKWNYLKLIGLAMDGITSFSIRPLRIATAVGGLVALTAFV
YGVFIVFKTMMFGEPITGYPSMMVVQLALGGIQLLSIGLMGEYIGRIFIETKNRPLYLIQSVVDTPALKTHFKLEESA
>Mature_317_residues
SIIVPFYDEQEVLEEFHSRLTKVLDSLPIKSEIVYVDDGSKDSSLELVSSFTSINSSISVIGLSRNFGKESAMSAGLEHC
RGQAVILLDADLQDPPELIPQMIAKWREGYDVVNMQRSQRDGETWFKKFSAASFYKVMNVAAKIDVPENVGDFRLLSREV
VDHINQLPERNRYMKGIFSWPGFRQATLQFKRDARFCGETKWNYLKLIGLAMDGITSFSIRPLRIATAVGGLVALTAFVY
GVFIVFKTMMFGEPITGYPSMMVVQLALGGIQLLSIGLMGEYIGRIFIETKNRPLYLIQSVVDTPALKTHFKLEESA

Specific function: Involved In O Antigen Modification. Catalyzes The Transfer Of The Glucose Residue From Udp-Glucose To A Lipid Carrier (By Similarity). [C]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. GtrB subfamily [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=171, Percent_Identity=28.0701754385965, Blast_Score=72, Evalue=8e-13,
Organism=Escherichia coli, GI1788692, Length=302, Percent_Identity=44.7019867549669, Blast_Score=283, Evalue=1e-77,
Organism=Escherichia coli, GI1788588, Length=310, Percent_Identity=35.1612903225806, Blast_Score=191, Evalue=4e-50,
Organism=Saccharomyces cerevisiae, GI6325441, Length=103, Percent_Identity=33.0097087378641, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24585265, Length=169, Percent_Identity=26.0355029585799, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 35749; Mature: 35618

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIIVPFYDEQEVLEEFHSRLTKVLDSLPIKSEIVYVDDGSKDSSLELVSSFTSINSSIS
CEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEE
VIGLSRNFGKESAMSAGLEHCRGQAVILLDADLQDPPELIPQMIAKWREGYDVVNMQRSQ
EEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHC
RDGETWFKKFSAASFYKVMNVAAKIDVPENVGDFRLLSREVVDHINQLPERNRYMKGIFS
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHC
WPGFRQATLQFKRDARFCGETKWNYLKLIGLAMDGITSFSIRPLRIATAVGGLVALTAFV
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
YGVFIVFKTMMFGEPITGYPSMMVVQLALGGIQLLSIGLMGEYIGRIFIETKNRPLYLIQ
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCHHHHH
SVVDTPALKTHFKLEESA
HHHCCCCHHHEEEECCCC
>Mature Secondary Structure 
SIIVPFYDEQEVLEEFHSRLTKVLDSLPIKSEIVYVDDGSKDSSLELVSSFTSINSSIS
EEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEE
VIGLSRNFGKESAMSAGLEHCRGQAVILLDADLQDPPELIPQMIAKWREGYDVVNMQRSQ
EEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHC
RDGETWFKKFSAASFYKVMNVAAKIDVPENVGDFRLLSREVVDHINQLPERNRYMKGIFS
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHC
WPGFRQATLQFKRDARFCGETKWNYLKLIGLAMDGITSFSIRPLRIATAVGGLVALTAFV
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
YGVFIVFKTMMFGEPITGYPSMMVVQLALGGIQLLSIGLMGEYIGRIFIETKNRPLYLIQ
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCHHHHH
SVVDTPALKTHFKLEESA
HHHCCCCHHHEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]