Click here to switch to the map view.

The map label for this gene is ybgF [H]

Identifier: 218709112

GI number: 218709112

Start: 1182006

End: 1182803

Strand: Direct

Name: ybgF [H]

Synonym: VS_1118

Alternate gene names: 218709112

Gene position: 1182006-1182803 (Clockwise)

Preceding gene: 218709111

Following gene: 218709113

Centisome position: 35.83

GC content: 45.24

Gene sequence:

>798_bases
TTGAGGAATTGCCTCATGTTCAGTAACACAAAGCGAGTCATTTTGCTTTCGTTACTGGCAAGTGCAGCGAACACTACGTT
CGCTGCACCAGCTCCAGTATCCGATCTCAATAGCACCGCAACAAATTCATCATCTTCCTCTCGATCAGCATCTAACGAAT
CAGATATTGAGCGTTTAGAGCGCTTGCTTCAAAATCGTAATCTCGTTCAGCTTCAAATGCAGCAGCAAATCGACGATATG
TCACTGGAGATCAGTGAACTTCGTGGTGAGTTGGAGCGAAACAGCTACGATATGAAACAAATGCTCGAGCGCCAACGTGA
ATTGTTCATTGAACTGGATCGTGTGAGAGGCGAGGTGAAAGCAGCAGGAACAGCAACGGTAGCAGTAACAGCGAGCGAAG
GCTCTAAGGATGCTTCTGGTACGTTCAGTACTGATGTTGATGAGCAAACAGCTTATCAGAATGCTGTAGATATGATTCTA
AAGCAGCGAGACTACACGGGTGCTATTGCAGCATTCCAAAAGTTTCAAAAAGACTTCCCAGACTCGACCTTCACGCCTAA
CACCCATTATTGGTTAGGTCAGCTTTATTTCGCTAAAAAGCAAGATAAGGAAGCTGTGAAGAGCTTTGCCGCTGTTGTGT
CATACAAAGACTCCAACAAGCGCTCTGATGCTCTGGTTAAGCTTGGTGACATAGCTACGCGTAACAACAACGCGACGCAA
GCTAAGAAATATTACCAGCAAGTTGTAACTGAGTATCCAAACAGTGCTTCGGCTAAAGTGGCTAAAACCCACTTGTAA

Upstream 100 bases:

>100_bases
CTACGGTGAAGAGAAGCCACTTCTTCTAGGTCAATCTGAAGACGTGTACGCTAAAAACCGTCGTGCAGTACTAGTTTACT
AATTTCAGTAGGCTATATAA

Downstream 100 bases:

>100_bases
ACAAAATAGGGGTGCTCAGGTACCTCTTTTTTATATCTGATCACTTTCGTTTTGTGTCTACTTCTCTTCTTTGTAATGCC
AACGCATCGCTTTGTTTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MRNCLMFSNTKRVILLSLLASAANTTFAAPAPVSDLNSTATNSSSSSRSASNESDIERLERLLQNRNLVQLQMQQQIDDM
SLEISELRGELERNSYDMKQMLERQRELFIELDRVRGEVKAAGTATVAVTASEGSKDASGTFSTDVDEQTAYQNAVDMIL
KQRDYTGAIAAFQKFQKDFPDSTFTPNTHYWLGQLYFAKKQDKEAVKSFAAVVSYKDSNKRSDALVKLGDIATRNNNATQ
AKKYYQQVVTEYPNSASAKVAKTHL

Sequences:

>Translated_265_residues
MRNCLMFSNTKRVILLSLLASAANTTFAAPAPVSDLNSTATNSSSSSRSASNESDIERLERLLQNRNLVQLQMQQQIDDM
SLEISELRGELERNSYDMKQMLERQRELFIELDRVRGEVKAAGTATVAVTASEGSKDASGTFSTDVDEQTAYQNAVDMIL
KQRDYTGAIAAFQKFQKDFPDSTFTPNTHYWLGQLYFAKKQDKEAVKSFAAVVSYKDSNKRSDALVKLGDIATRNNNATQ
AKKYYQQVVTEYPNSASAKVAKTHL
>Mature_265_residues
MRNCLMFSNTKRVILLSLLASAANTTFAAPAPVSDLNSTATNSSSSSRSASNESDIERLERLLQNRNLVQLQMQQQIDDM
SLEISELRGELERNSYDMKQMLERQRELFIELDRVRGEVKAAGTATVAVTASEGSKDASGTFSTDVDEQTAYQNAVDMIL
KQRDYTGAIAAFQKFQKDFPDSTFTPNTHYWLGQLYFAKKQDKEAVKSFAAVVSYKDSNKRSDALVKLGDIATRNNNATQ
AKKYYQQVVTEYPNSASAKVAKTHL

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=236, Percent_Identity=34.3220338983051, Blast_Score=124, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29556; Mature: 29556

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNCLMFSNTKRVILLSLLASAANTTFAAPAPVSDLNSTATNSSSSSRSASNESDIERLE
CCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHH
RLLQNRNLVQLQMQQQIDDMSLEISELRGELERNSYDMKQMLERQRELFIELDRVRGEVK
HHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AAGTATVAVTASEGSKDASGTFSTDVDEQTAYQNAVDMILKQRDYTGAIAAFQKFQKDFP
CCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
DSTFTPNTHYWLGQLYFAKKQDKEAVKSFAAVVSYKDSNKRSDALVKLGDIATRNNNATQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCCHHCCCCCHHH
AKKYYQQVVTEYPNSASAKVAKTHL
HHHHHHHHHHHCCCCCCCCHHHCCC
>Mature Secondary Structure
MRNCLMFSNTKRVILLSLLASAANTTFAAPAPVSDLNSTATNSSSSSRSASNESDIERLE
CCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHH
RLLQNRNLVQLQMQQQIDDMSLEISELRGELERNSYDMKQMLERQRELFIELDRVRGEVK
HHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AAGTATVAVTASEGSKDASGTFSTDVDEQTAYQNAVDMILKQRDYTGAIAAFQKFQKDFP
CCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
DSTFTPNTHYWLGQLYFAKKQDKEAVKSFAAVVSYKDSNKRSDALVKLGDIATRNNNATQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCCHHCCCCCHHH
AKKYYQQVVTEYPNSASAKVAKTHL
HHHHHHHHHHHCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]