Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 218709103

GI number: 218709103

Start: 1173957

End: 1175573

Strand: Direct

Name: cydA [H]

Synonym: VS_1109

Alternate gene names: 218709103

Gene position: 1173957-1175573 (Clockwise)

Preceding gene: 218709102

Following gene: 218709104

Centisome position: 35.58

GC content: 44.47

Gene sequence:

>1617_bases
GTGTCATTCAGCCGACACAAAGGAGTTACCATGATTGATGTTGTTGATCTGTCGCGATTGCAATTTGCATTTACAGCGAT
GTATCACTTCCTATTTGTTCCACTGACTTTAGGTATGGCATTTCTACTTGCCATTATGGAGTCAGTTTATGTAATGACTG
GCAAGCAAATTTACAAGGACATGACTAAGTTCTGGGGTAAATTGTTTGGTATTAACTTTGCTCTTGGTGTAGCGACAGGC
TTAACCATGGAGTTCCAGTTCGGTACTAACTGGTCATACTATTCTCACTATGTTGGCGACATCTTTGGTGCTCCGCTGGC
TATCGAAGCGCTTGTTGCATTCTTCCTAGAGTCTACTTTTGTTGGTCTTTTCTTCTTCGGTTGGGACAGATTGTCAAAGC
GTCAACACTTAGCGGTAACGTGGTTAGTAGCACTTGGTTCTAACTTCTCTGCGCTTTGGATCTTGGTAGCTAACGGCTGG
ATGCAAAATCCAGTGGGTGCGGAATTTAACTTTGAAACTATGCGTATGGAAATGGTGAGCTTCGCTGAAGTTGTACTAAA
TCCAGTAGCACAGGTTAAATTCGTACACACAGTAGCGTCTGGTTACACAACGGGTGCAATGTTCATCCTTGGTATCAGCT
CATACTACATTCTTAAAGGTCGTGACCTTGCCTTTGCTCGTCGCTCTTTTGCGATTGCAGCATCTTTCGGCATGGCGGCA
ATCTTGTCAGTAATCGTGCTAGGTGATGAATCTGGTTACGAGCTTGGTGAAGTTCAAAAAGTGAAGCTAGCAGCTATTGA
AGCTGAATGGCACACTGAAGAAGCACCGGCCGCGTTCACTGTATTTGGTGTTCCAAACCAAGAAACCATGCACACAGACT
ACGCAATTAAGATTCCTTACGTTATGGGTATTATTGCAACACGTTCTTTTGATACAGAAGTAACAGGACTACGTGACTTG
CGCGACGATCACGTTGATCGTATTCGTACCGGTATGTATGCGTATGAGTTGCTTGAAAAGCTACGTGGTGGTGACCGTTC
AGAAGAGAACAAAGCGGCATTTGATGAAGTAAAAGGTGACCTAGGTTACGGTCTGCTTCTTAAGCGCTACACAGACGATG
TTGTTGATGCAACAGAAGACCAAATCCAAATGGCTGCGGATGATTCTATCCCGACAGTTTGGCCTCTATTCTGGTCGTTC
CGTCTGATGGTTGCTTGTGGCTTCATCATGCTGTTTGTATTCGGTGCGGCGTTTGTTCAAACGTGTCGTCAGAAGATCGA
ACAGAAACCATGGGTACTTAAAGCGGCGCTATTCTCAATCCCACTACCTTGGATTGCGATTGAAGCAGGTTGGTTTGTTG
CTGAATTTGGTCGTCAACCATGGGCGGTTGGTGAAATCCTGCCGGTTAACGTTGCTGCATCAGCACTGACTATTGAACAG
CTTTGGACTTCTCTATTTGCAATTCTTGCACTGTACACAGTGTTCTTGATTGCTGAAGTTTACCTAATGCTGAAATTCGC
ACGTAAAGGTCCAAGTAGCTTAAAGACAGGCCGTTACCACTTTGAACAAAACGATAACTCTGTTGAAGACAAAGTTAGCC
GTTCAGTCGAAGTATAA

Upstream 100 bases:

>100_bases
AATCTAACTATAACGGTACGTTTTTACTACAAATTTCAATTTGTAATAACAATCTCACGAATTGTTTTAACACGGATTTT
TGCGGTGAATAATCACACAA

Downstream 100 bases:

>100_bases
GTGAGGGAATATTATGTTTGATTACGAAAGCTTACGACTTATTTGGTGGGTATTGATCGGTGTTCTACTGGTTGGTTTCG
CCGTAACTGACGGCTTTGAC

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 538; Mature: 537

Protein sequence:

>538_residues
MSFSRHKGVTMIDVVDLSRLQFAFTAMYHFLFVPLTLGMAFLLAIMESVYVMTGKQIYKDMTKFWGKLFGINFALGVATG
LTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRLSKRQHLAVTWLVALGSNFSALWILVANGW
MQNPVGAEFNFETMRMEMVSFAEVVLNPVAQVKFVHTVASGYTTGAMFILGISSYYILKGRDLAFARRSFAIAASFGMAA
ILSVIVLGDESGYELGEVQKVKLAAIEAEWHTEEAPAAFTVFGVPNQETMHTDYAIKIPYVMGIIATRSFDTEVTGLRDL
RDDHVDRIRTGMYAYELLEKLRGGDRSEENKAAFDEVKGDLGYGLLLKRYTDDVVDATEDQIQMAADDSIPTVWPLFWSF
RLMVACGFIMLFVFGAAFVQTCRQKIEQKPWVLKAALFSIPLPWIAIEAGWFVAEFGRQPWAVGEILPVNVAASALTIEQ
LWTSLFAILALYTVFLIAEVYLMLKFARKGPSSLKTGRYHFEQNDNSVEDKVSRSVEV

Sequences:

>Translated_538_residues
MSFSRHKGVTMIDVVDLSRLQFAFTAMYHFLFVPLTLGMAFLLAIMESVYVMTGKQIYKDMTKFWGKLFGINFALGVATG
LTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRLSKRQHLAVTWLVALGSNFSALWILVANGW
MQNPVGAEFNFETMRMEMVSFAEVVLNPVAQVKFVHTVASGYTTGAMFILGISSYYILKGRDLAFARRSFAIAASFGMAA
ILSVIVLGDESGYELGEVQKVKLAAIEAEWHTEEAPAAFTVFGVPNQETMHTDYAIKIPYVMGIIATRSFDTEVTGLRDL
RDDHVDRIRTGMYAYELLEKLRGGDRSEENKAAFDEVKGDLGYGLLLKRYTDDVVDATEDQIQMAADDSIPTVWPLFWSF
RLMVACGFIMLFVFGAAFVQTCRQKIEQKPWVLKAALFSIPLPWIAIEAGWFVAEFGRQPWAVGEILPVNVAASALTIEQ
LWTSLFAILALYTVFLIAEVYLMLKFARKGPSSLKTGRYHFEQNDNSVEDKVSRSVEV
>Mature_537_residues
SFSRHKGVTMIDVVDLSRLQFAFTAMYHFLFVPLTLGMAFLLAIMESVYVMTGKQIYKDMTKFWGKLFGINFALGVATGL
TMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRLSKRQHLAVTWLVALGSNFSALWILVANGWM
QNPVGAEFNFETMRMEMVSFAEVVLNPVAQVKFVHTVASGYTTGAMFILGISSYYILKGRDLAFARRSFAIAASFGMAAI
LSVIVLGDESGYELGEVQKVKLAAIEAEWHTEEAPAAFTVFGVPNQETMHTDYAIKIPYVMGIIATRSFDTEVTGLRDLR
DDHVDRIRTGMYAYELLEKLRGGDRSEENKAAFDEVKGDLGYGLLLKRYTDDVVDATEDQIQMAADDSIPTVWPLFWSFR
LMVACGFIMLFVFGAAFVQTCRQKIEQKPWVLKAALFSIPLPWIAIEAGWFVAEFGRQPWAVGEILPVNVAASALTIEQL
WTSLFAILALYTVFLIAEVYLMLKFARKGPSSLKTGRYHFEQNDNSVEDKVSRSVEV

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=519, Percent_Identity=73.6030828516378, Blast_Score=806, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=506, Percent_Identity=63.0434782608696, Blast_Score=647, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 60425; Mature: 60294

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSRHKGVTMIDVVDLSRLQFAFTAMYHFLFVPLTLGMAFLLAIMESVYVMTGKQIYKD
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTF
HHHHHHHHHCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VGLFFFGWDRLSKRQHLAVTWLVALGSNFSALWILVANGWMQNPVGAEFNFETMRMEMVS
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
FAEVVLNPVAQVKFVHTVASGYTTGAMFILGISSYYILKGRDLAFARRSFAIAASFGMAA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCEEEEECCCHHHHHHHHHHHHHHHHHH
ILSVIVLGDESGYELGEVQKVKLAAIEAEWHTEEAPAAFTVFGVPNQETMHTDYAIKIPY
HHHHHEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEHHH
VMGIIATRSFDTEVTGLRDLRDDHVDRIRTGMYAYELLEKLRGGDRSEENKAAFDEVKGD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
LGYGLLLKRYTDDVVDATEDQIQMAADDSIPTVWPLFWSFRLMVACGFIMLFVFGAAFVQ
CCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TCRQKIEQKPWVLKAALFSIPLPWIAIEAGWFVAEFGRQPWAVGEILPVNVAASALTIEQ
HHHHHHHCCCHHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCCCCEEEECHHHHHHHHHH
LWTSLFAILALYTVFLIAEVYLMLKFARKGPSSLKTGRYHFEQNDNSVEDKVSRSVEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
SFSRHKGVTMIDVVDLSRLQFAFTAMYHFLFVPLTLGMAFLLAIMESVYVMTGKQIYKD
CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTF
HHHHHHHHHCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VGLFFFGWDRLSKRQHLAVTWLVALGSNFSALWILVANGWMQNPVGAEFNFETMRMEMVS
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
FAEVVLNPVAQVKFVHTVASGYTTGAMFILGISSYYILKGRDLAFARRSFAIAASFGMAA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCEEEEECCCHHHHHHHHHHHHHHHHHH
ILSVIVLGDESGYELGEVQKVKLAAIEAEWHTEEAPAAFTVFGVPNQETMHTDYAIKIPY
HHHHHEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEHHH
VMGIIATRSFDTEVTGLRDLRDDHVDRIRTGMYAYELLEKLRGGDRSEENKAAFDEVKGD
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
LGYGLLLKRYTDDVVDATEDQIQMAADDSIPTVWPLFWSFRLMVACGFIMLFVFGAAFVQ
CCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TCRQKIEQKPWVLKAALFSIPLPWIAIEAGWFVAEFGRQPWAVGEILPVNVAASALTIEQ
HHHHHHHCCCHHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCCCCEEEECHHHHHHHHHH
LWTSLFAILALYTVFLIAEVYLMLKFARKGPSSLKTGRYHFEQNDNSVEDKVSRSVEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]