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The map label for this gene is cydB [H]

Identifier: 218709104

GI number: 218709104

Start: 1175587

End: 1176723

Strand: Direct

Name: cydB [H]

Synonym: VS_1110

Alternate gene names: 218709104

Gene position: 1175587-1176723 (Clockwise)

Preceding gene: 218709103

Following gene: 218709105

Centisome position: 35.63

GC content: 45.65

Gene sequence:

>1137_bases
ATGTTTGATTACGAAAGCTTACGACTTATTTGGTGGGTATTGATCGGTGTTCTACTGGTTGGTTTCGCCGTAACTGACGG
CTTTGACATGGGTGTTGCTGCTCTTTCACCGGTTATCGGTAAGAGCGACACTGAACGTCGTATTATGCTAAACACGATTG
CCCCTCACTGGGATGGTAACCAAGTTTGGCTAATTACGGCTGGTGGTGCATTGTTCGCTGCATGGCCTCTGGTTTACGCA
ACGTCGTTTTCTGGTTTCTACTTTGCAATGTACGTGACGCTAGCAGCACTTTGGCTACGTCCACTTGCTCTTGATTACCG
TTCAAAGATTGAAGAGCCAAAATGGCGTAAGGCATGGGACTACGCACTTTGCTTTAGTGGCACAGTTCCGCCAATCATCT
TTGGTGTAGCATTTGGTAACTTACTGCAAGGTGTTCCATTCGAGCTGAACTACCTGATGATGTCTAAGTATCATGGTACG
TTCTTCGCTCTGCTAAACCCGTTTGCATTACTATGTGGCGTGTTGGCTCTGATGTTGTTCGTGATGCAAGGTGCAACATG
GCTTCAAATGAAGACAACAGAAGAACTGCACAGCCGCGCACGTAACGTTGCTCAGATCACTGGCCTAATTGCTATTGCTC
TGTTCGTTATCGGTGGTTTCTGGGTTCAATCTATCGAAGGCTATGTAATTACAAGCACGATAGACACGTTTGCTGATTCA
AACCCACTAAATAAAGAAGTATCACTTCAAGTTGGTGCTTGGATGACAAACTTCGAAACGTATCCAGCAATGTGGGCTGC
GCCGATTCTTGGTGTAGTAATGCCACTACTTGCTGTGATTGCATCTCGCTTTGAGCGTGGTGGTTTCGCATTCTTGTTCT
CAAGCCTATCTAACGCTGGTGTTATTCTAACGGCTGGTTTTGCAATGTTCCCATTCGTAATGCCATCAAGCCTGAACCCT
AACCATAGTTTGACTATGTGGGATTCAACAGCAAGTGAGCTAACGCTTGGTCTTATGACTGGAGTTGCGGCGGTAATGGT
TCCTGTGATTCTTGGCTACACAACGTGGACATACTACAAAATGTTCGGTCGTCTAGATAAGAAACACATCGAAGATAACG
ACGTTTCAGCTTACTAA

Upstream 100 bases:

>100_bases
CCAAGTAGCTTAAAGACAGGCCGTTACCACTTTGAACAAAACGATAACTCTGTTGAAGACAAAGTTAGCCGTTCAGTCGA
AGTATAAGTGAGGGAATATT

Downstream 100 bases:

>100_bases
GCTAGAAGTTAAATAACTTAGGAGAAATTTTATGTGGTATTTCGCATGGATTTTGGGTGTACTTCTAGCATGTGCATTCG
GCATCATCAATGCTCTATGG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MFDYESLRLIWWVLIGVLLVGFAVTDGFDMGVAALSPVIGKSDTERRIMLNTIAPHWDGNQVWLITAGGALFAAWPLVYA
TSFSGFYFAMYVTLAALWLRPLALDYRSKIEEPKWRKAWDYALCFSGTVPPIIFGVAFGNLLQGVPFELNYLMMSKYHGT
FFALLNPFALLCGVLALMLFVMQGATWLQMKTTEELHSRARNVAQITGLIAIALFVIGGFWVQSIEGYVITSTIDTFADS
NPLNKEVSLQVGAWMTNFETYPAMWAAPILGVVMPLLAVIASRFERGGFAFLFSSLSNAGVILTAGFAMFPFVMPSSLNP
NHSLTMWDSTASELTLGLMTGVAAVMVPVILGYTTWTYYKMFGRLDKKHIEDNDVSAY

Sequences:

>Translated_378_residues
MFDYESLRLIWWVLIGVLLVGFAVTDGFDMGVAALSPVIGKSDTERRIMLNTIAPHWDGNQVWLITAGGALFAAWPLVYA
TSFSGFYFAMYVTLAALWLRPLALDYRSKIEEPKWRKAWDYALCFSGTVPPIIFGVAFGNLLQGVPFELNYLMMSKYHGT
FFALLNPFALLCGVLALMLFVMQGATWLQMKTTEELHSRARNVAQITGLIAIALFVIGGFWVQSIEGYVITSTIDTFADS
NPLNKEVSLQVGAWMTNFETYPAMWAAPILGVVMPLLAVIASRFERGGFAFLFSSLSNAGVILTAGFAMFPFVMPSSLNP
NHSLTMWDSTASELTLGLMTGVAAVMVPVILGYTTWTYYKMFGRLDKKHIEDNDVSAY
>Mature_378_residues
MFDYESLRLIWWVLIGVLLVGFAVTDGFDMGVAALSPVIGKSDTERRIMLNTIAPHWDGNQVWLITAGGALFAAWPLVYA
TSFSGFYFAMYVTLAALWLRPLALDYRSKIEEPKWRKAWDYALCFSGTVPPIIFGVAFGNLLQGVPFELNYLMMSKYHGT
FFALLNPFALLCGVLALMLFVMQGATWLQMKTTEELHSRARNVAQITGLIAIALFVIGGFWVQSIEGYVITSTIDTFADS
NPLNKEVSLQVGAWMTNFETYPAMWAAPILGVVMPLLAVIASRFERGGFAFLFSSLSNAGVILTAGFAMFPFVMPSSLNP
NHSLTMWDSTASELTLGLMTGVAAVMVPVILGYTTWTYYKMFGRLDKKHIEDNDVSAY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=59.8944591029024, Blast_Score=478, Evalue=1e-136,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=50.131926121372, Blast_Score=399, Evalue=1e-112,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41913; Mature: 41913

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDYESLRLIWWVLIGVLLVGFAVTDGFDMGVAALSPVIGKSDTERRIMLNTIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCC
QVWLITAGGALFAAWPLVYATSFSGFYFAMYVTLAALWLRPLALDYRSKIEEPKWRKAWD
EEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
YALCFSGTVPPIIFGVAFGNLLQGVPFELNYLMMSKYHGTFFALLNPFALLCGVLALMLF
EEEEECCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VMQGATWLQMKTTEELHSRARNVAQITGLIAIALFVIGGFWVQSIEGYVITSTIDTFADS
HHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCC
NPLNKEVSLQVGAWMTNFETYPAMWAAPILGVVMPLLAVIASRFERGGFAFLFSSLSNAG
CCCCCEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
VILTAGFAMFPFVMPSSLNPNHSLTMWDSTASELTLGLMTGVAAVMVPVILGYTTWTYYK
EEEEEHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDKKHIEDNDVSAY
HHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MFDYESLRLIWWVLIGVLLVGFAVTDGFDMGVAALSPVIGKSDTERRIMLNTIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCC
QVWLITAGGALFAAWPLVYATSFSGFYFAMYVTLAALWLRPLALDYRSKIEEPKWRKAWD
EEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
YALCFSGTVPPIIFGVAFGNLLQGVPFELNYLMMSKYHGTFFALLNPFALLCGVLALMLF
EEEEECCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VMQGATWLQMKTTEELHSRARNVAQITGLIAIALFVIGGFWVQSIEGYVITSTIDTFADS
HHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCC
NPLNKEVSLQVGAWMTNFETYPAMWAAPILGVVMPLLAVIASRFERGGFAFLFSSLSNAG
CCCCCEEEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
VILTAGFAMFPFVMPSSLNPNHSLTMWDSTASELTLGLMTGVAAVMVPVILGYTTWTYYK
EEEEEHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDKKHIEDNDVSAY
HHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]