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The map label for this gene is fliN [H]

Identifier: 218708831

GI number: 218708831

Start: 853871

End: 854281

Strand: Direct

Name: fliN [H]

Synonym: VS_0831

Alternate gene names: 218708831

Gene position: 853871-854281 (Clockwise)

Preceding gene: 218708830

Following gene: 218708832

Centisome position: 25.88

GC content: 44.28

Gene sequence:

>411_bases
ATGGAACCTAGTGAAGATCAAAAGCTAGCAGACGAATGGGCTGCAGCACTTGGTGAAGACCCTTCAGCGCCGTCAATCGA
TGTTGATGATGTTCTCGCGGCACCACTTGATGAGTTAACCGACTCATCGTCTCCAATTTCAGAAGATGAGCGTCGTAAGC
TGGATACCATTATGGATATCCCAGTGACTATCTCAATGGAAGTCGGCCGCTCTCAAATTAGTATCCGTAACTTACTTCAA
TTGAACCAAGGTTCGGTTGTTGAGCTAGATAGAATTGCTGGTGAGTCACTTGACGTGATGGTTAACGGCACTCTGATTGC
TCATGGAGAAGTGGTTGTGGTGAATGACAAATTTGGTATTCGTTTGACAGACGTTATTAGTCAAACAGAACGAATTAAGA
AGTTGCGTTAA

Upstream 100 bases:

>100_bases
TCAAAACCGATCTCGCTTTTCTTGGCAAAGACTTAATGTCTGAGTTGGAAAATAGCGAAGATGAAGAATAGCAAAGTAGA
TAAAAGTATAGGAATTGGTA

Downstream 100 bases:

>100_bases
TGAGCTTCTTGTCTCAAAGACTGGCGGGCTCTTCTCTCGGAATGACAGGTTTGTCTCGTAGAGTCTTGGGAGTAGGGCTA
CTTGCTACTCCTTCTATTGC

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MEPSEDQKLADEWAAALGEDPSAPSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQ
LNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR

Sequences:

>Translated_136_residues
MEPSEDQKLADEWAAALGEDPSAPSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQ
LNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR
>Mature_136_residues
MEPSEDQKLADEWAAALGEDPSAPSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQ
LNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=135, Percent_Identity=44.4444444444444, Blast_Score=109, Evalue=6e-26,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 14868; Mature: 14868

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPSEDQKLADEWAAALGEDPSAPSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDI
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHCC
PVTISMEVGRSQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGI
CEEEEECCCCHHHHHHHHHHCCCCCEEEHHHHCCCCEEEEECCEEEECCEEEEEECCCCE
RLTDVISQTERIKKLR
EHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEPSEDQKLADEWAAALGEDPSAPSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDI
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHCC
PVTISMEVGRSQISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGI
CEEEEECCCCHHHHHHHHHHCCCCCEEEHHHHCCCCEEEEECCEEEECCEEEEEECCCCE
RLTDVISQTERIKKLR
EHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]