Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
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Accession | NC_011753 |
Length | 3,299,303 |
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The map label for this gene is chb [H]
Identifier: 218708767
GI number: 218708767
Start: 785072
End: 787726
Strand: Direct
Name: chb [H]
Synonym: VS_0765
Alternate gene names: 218708767
Gene position: 785072-787726 (Clockwise)
Preceding gene: 218708761
Following gene: 218708768
Centisome position: 23.8
GC content: 45.73
Gene sequence:
>2655_bases ATGTTGAAGAGAAACTTACTATCTGTAGCGGTACTGGCTGGTTTGACGGGTTGTGCTGTAACGCAAGCACCTGAGCAACA GGTGGTTAATGCACTGGCTGATAACCTTGATGTGCAATATGAAATTCTAACCAATCACGGTGCGAATGAAGGCATGGCTT GTCAGGACCTAGGTGCTGAGTGGGCGTCATGTAATAAAGTGAACATGACCCTGACCAATGACGGTGAAGCGATTGATTCG AAAGATTGGACTATCTACTTCCATAGTATTCGCCTTATTTTAGATGTTGATAACGAACAATTTAAAATCACTCGTGTAAC GGGTGACCTACACAAACTAGAACCTACAGATAAGTTCGATGGTTTTGCCGCTGGTGAAGAAGTGATTCTTCCGTTAACGA GTGAGTACTGGCAACTGTTTGAAACTGACTTTATGCCGGGTGCATTCGTAACTGCGCCAAACGCAGAACCTAAGATGATT GCTTCATTGAATACTGAAGATGTCGCGTCGTTCGTAACAGGTTTGGAAGGAAACAACCTTAAGCGTACACCTGATGACAA CAATGTCATGGCGACTGCGGTTACGCGTTTCGAAAAGAATGCGGATCTAGCAACGCAAGACGTTTCAACAACGCTTTTAC CAACCCCAATGTCGGTAGAAGCGGGGGAAGGTTCAGTGAGTATTGCTGGTGGTATTGCCCTACCTAAAGAGGCATTCGAT GCTGAGCAGTTCGCTGCAATTGAAGAACGTGCAGATGTGGTAAACGTAGATGTGAGTGGCGACCTACCTGTTAGTGTTGC CGTTGTTCCTACTCAGTTTACGGGTGATTTAGCAAAATCTGGCGCTTATGAACTAAGCATCTCGGAAGAGGGGATTGCGA TTAAAGCGTTTGATAAAACAGGTGCTTTCTACGCAGTTCAGTCTATTTTTGGCCTAATAGACAGTCAGAACGCTGAATCA CTACCACAACTGTCGATCAAAGATGCACCACGCTTTGATTACCGTGGTGTGATGGTGGATGTTGCTCGAAACTTTCACTC AAAAGATGCCATCCTAGCGACGCTAGATCAAATGGCTGCATACAAGATGAATAAACTTCACCTTCACTTAACTGATGATG AAGGTTGGCGTTTAGAAATCCCAGGTTTACCAGAGCTAACGGATGTAGGGTCTAATCGTTGTTTTGATTTGGAAGAGCAA AGCTGTTTACTGCCTCAGCTAGGTTCAGGTCCAACAACAGACAACTTTGGCTCTGGTTTCTTTAGTAAAGCGGATTACGT CGAGATCTTAAGCTACGCAAAAGCGCGCAGCATCGAAGTAATTCCAGAAATTGATATGCCAGCACACGCTCGTTCTGCTG TGGTATCAATGGAAGCGCGTTACACTCGCCTAATGGCGGAAGGCAAAGAAGCTGAAGCAAGTGAATATCGCTTGATGGAT CCACAAGATACTTCAAACGTGACGACTATTCAGTTCTACGATAAGCACAGCTTCATCAACCCATGTATGGAATCATCGAC TCGCTTTGTTGATAAAGTGATTACTGAAATTGCAGCAATGCACAATGAAGCGGGTATGCCGCTAACGACTTGGCACTTTG GTGGTGATGAAGCGAAAAACATCAAGCTAGGCGCAGGCTTTCAAGATGTTGATGCTCAAGACAAAGTGGCATGGAAAGGT AACATTGAGCTAGACAAGCAAGACAAGCCATTCCAACAGTCTCCACAATGTCAGTCTTTGATTGCTGATGGTTCAGTGAG TGATTTTGGTCACCTGCCTGGCTACTTTGCAAAAGAAGTATCAAAAATTGTTGCAGACAAAGGCATTCCTCACTTCCAAG CTTGGCAAGATGGCTTGAAGTATGTGGAAGAGGGTGAATCTGGCTTCGCTACTGAAACTACTCGCGTTAACTTCTGGGAC GTTCTTTACTGGGGCGGCACTTCATCAGTGTACGACTGGTCAGCGAAAGGTTATGACGTGATTGTCTCTAACCCAGATTA CGTATACATGGATATGCCATACGAAGTTGACGCAGCAGAGCGAGGTTACTACTGGGCAACGCGTGCAACGGATACTCGTA AGATGTTTGGCTTCGCACCAGAAAACATGCCACAAAACGCGGAAACCTCATTAGACCGTGACGGCAATGGCTTCACTGGT AAAGGCGAGATTGAAGCAAAACCTTTCTACGGCTTGTCTGCACAGCTTTGGTCTGAAACAGTACGTACCGACGAGCAGTA TGAATACATGGTGTTCCCTCGCGTACTTGCAGCAGCAGAGCGCGCATGGCACAGAGCTGATTGGGAAAACGACTACAAAG TGGGCGTTGAATACTCTCAAGATACCGACCTAGTAAATAAGCAGTCTTTAAACTACGACTTTAATCGCTTCGCGAATATT GTTGGTCAACGTGAACTGGCTAAGCTTGAGAAAGCGGGTATTGATTACCGACTACCAGTTCCGGGGGCAAAAGTTATTGA TGGCAAGCTAGCGATGAACGTTCAATTCCCTGGCGTAGAGCTTCAATACTCAGCGGATGGTGAAAACTGGCTAACGTACG ATGAGCAACAACGTCCTTCGGTTTCAGGCGAAACTTACATCCGCTCTATCTCTGAAAGTGGCGAGAAAGTAAGTCGAGTG ACTTCGGTGAAATAA
Upstream 100 bases:
>100_bases TGATTTAATTCACGGCAAAAAATAAGCCCATATAGTTTATCTAACTTTCGAAGCGCTCCACTTTGCTTCTGACTCAATTT TAAATTTATGGGTGAATACG
Downstream 100 bases:
>100_bases TCGATAAGCAACATTAATAGATGAGCTCCCTAACTATTATCTTACTCAGATAAAAGTGGGAGCTTTTTTTTCGTCCAAAC TAAGTTCGGTACATTCCTTA
Product: N,N'-diacetylchitobiase precursor
Products: NA
Alternate protein names: Chitobiase; Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 884; Mature: 884
Protein sequence:
>884_residues MLKRNLLSVAVLAGLTGCAVTQAPEQQVVNALADNLDVQYEILTNHGANEGMACQDLGAEWASCNKVNMTLTNDGEAIDS KDWTIYFHSIRLILDVDNEQFKITRVTGDLHKLEPTDKFDGFAAGEEVILPLTSEYWQLFETDFMPGAFVTAPNAEPKMI ASLNTEDVASFVTGLEGNNLKRTPDDNNVMATAVTRFEKNADLATQDVSTTLLPTPMSVEAGEGSVSIAGGIALPKEAFD AEQFAAIEERADVVNVDVSGDLPVSVAVVPTQFTGDLAKSGAYELSISEEGIAIKAFDKTGAFYAVQSIFGLIDSQNAES LPQLSIKDAPRFDYRGVMVDVARNFHSKDAILATLDQMAAYKMNKLHLHLTDDEGWRLEIPGLPELTDVGSNRCFDLEEQ SCLLPQLGSGPTTDNFGSGFFSKADYVEILSYAKARSIEVIPEIDMPAHARSAVVSMEARYTRLMAEGKEAEASEYRLMD PQDTSNVTTIQFYDKHSFINPCMESSTRFVDKVITEIAAMHNEAGMPLTTWHFGGDEAKNIKLGAGFQDVDAQDKVAWKG NIELDKQDKPFQQSPQCQSLIADGSVSDFGHLPGYFAKEVSKIVADKGIPHFQAWQDGLKYVEEGESGFATETTRVNFWD VLYWGGTSSVYDWSAKGYDVIVSNPDYVYMDMPYEVDAAERGYYWATRATDTRKMFGFAPENMPQNAETSLDRDGNGFTG KGEIEAKPFYGLSAQLWSETVRTDEQYEYMVFPRVLAAAERAWHRADWENDYKVGVEYSQDTDLVNKQSLNYDFNRFANI VGQRELAKLEKAGIDYRLPVPGAKVIDGKLAMNVQFPGVELQYSADGENWLTYDEQQRPSVSGETYIRSISESGEKVSRV TSVK
Sequences:
>Translated_884_residues MLKRNLLSVAVLAGLTGCAVTQAPEQQVVNALADNLDVQYEILTNHGANEGMACQDLGAEWASCNKVNMTLTNDGEAIDS KDWTIYFHSIRLILDVDNEQFKITRVTGDLHKLEPTDKFDGFAAGEEVILPLTSEYWQLFETDFMPGAFVTAPNAEPKMI ASLNTEDVASFVTGLEGNNLKRTPDDNNVMATAVTRFEKNADLATQDVSTTLLPTPMSVEAGEGSVSIAGGIALPKEAFD AEQFAAIEERADVVNVDVSGDLPVSVAVVPTQFTGDLAKSGAYELSISEEGIAIKAFDKTGAFYAVQSIFGLIDSQNAES LPQLSIKDAPRFDYRGVMVDVARNFHSKDAILATLDQMAAYKMNKLHLHLTDDEGWRLEIPGLPELTDVGSNRCFDLEEQ SCLLPQLGSGPTTDNFGSGFFSKADYVEILSYAKARSIEVIPEIDMPAHARSAVVSMEARYTRLMAEGKEAEASEYRLMD PQDTSNVTTIQFYDKHSFINPCMESSTRFVDKVITEIAAMHNEAGMPLTTWHFGGDEAKNIKLGAGFQDVDAQDKVAWKG NIELDKQDKPFQQSPQCQSLIADGSVSDFGHLPGYFAKEVSKIVADKGIPHFQAWQDGLKYVEEGESGFATETTRVNFWD VLYWGGTSSVYDWSAKGYDVIVSNPDYVYMDMPYEVDAAERGYYWATRATDTRKMFGFAPENMPQNAETSLDRDGNGFTG KGEIEAKPFYGLSAQLWSETVRTDEQYEYMVFPRVLAAAERAWHRADWENDYKVGVEYSQDTDLVNKQSLNYDFNRFANI VGQRELAKLEKAGIDYRLPVPGAKVIDGKLAMNVQFPGVELQYSADGENWLTYDEQQRPSVSGETYIRSISESGEKVSRV TSVK >Mature_884_residues MLKRNLLSVAVLAGLTGCAVTQAPEQQVVNALADNLDVQYEILTNHGANEGMACQDLGAEWASCNKVNMTLTNDGEAIDS KDWTIYFHSIRLILDVDNEQFKITRVTGDLHKLEPTDKFDGFAAGEEVILPLTSEYWQLFETDFMPGAFVTAPNAEPKMI ASLNTEDVASFVTGLEGNNLKRTPDDNNVMATAVTRFEKNADLATQDVSTTLLPTPMSVEAGEGSVSIAGGIALPKEAFD AEQFAAIEERADVVNVDVSGDLPVSVAVVPTQFTGDLAKSGAYELSISEEGIAIKAFDKTGAFYAVQSIFGLIDSQNAES LPQLSIKDAPRFDYRGVMVDVARNFHSKDAILATLDQMAAYKMNKLHLHLTDDEGWRLEIPGLPELTDVGSNRCFDLEEQ SCLLPQLGSGPTTDNFGSGFFSKADYVEILSYAKARSIEVIPEIDMPAHARSAVVSMEARYTRLMAEGKEAEASEYRLMD PQDTSNVTTIQFYDKHSFINPCMESSTRFVDKVITEIAAMHNEAGMPLTTWHFGGDEAKNIKLGAGFQDVDAQDKVAWKG NIELDKQDKPFQQSPQCQSLIADGSVSDFGHLPGYFAKEVSKIVADKGIPHFQAWQDGLKYVEEGESGFATETTRVNFWD VLYWGGTSSVYDWSAKGYDVIVSNPDYVYMDMPYEVDAAERGYYWATRATDTRKMFGFAPENMPQNAETSLDRDGNGFTG KGEIEAKPFYGLSAQLWSETVRTDEQYEYMVFPRVLAAAERAWHRADWENDYKVGVEYSQDTDLVNKQSLNYDFNRFANI VGQRELAKLEKAGIDYRLPVPGAKVIDGKLAMNVQFPGVELQYSADGENWLTYDEQQRPSVSGETYIRSISESGEKVSRV TSVK
Specific function: Hydrolysis of terminal, non-reducing N-acetyl-beta-D- glucosamine residues in chitobiose and higher analogs, and in glycoproteins [H]
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Homo sapiens, GI4504373, Length=498, Percent_Identity=23.8955823293173, Blast_Score=94, Evalue=7e-19, Organism=Homo sapiens, GI189181666, Length=338, Percent_Identity=22.7810650887574, Blast_Score=81, Evalue=5e-15, Organism=Drosophila melanogaster, GI24657468, Length=507, Percent_Identity=22.2879684418146, Blast_Score=84, Evalue=4e-16, Organism=Drosophila melanogaster, GI17647501, Length=507, Percent_Identity=22.2879684418146, Blast_Score=84, Evalue=4e-16, Organism=Drosophila melanogaster, GI281365639, Length=507, Percent_Identity=22.2879684418146, Blast_Score=84, Evalue=5e-16, Organism=Drosophila melanogaster, GI24657474, Length=507, Percent_Identity=22.2879684418146, Blast_Score=84, Evalue=5e-16, Organism=Drosophila melanogaster, GI17933586, Length=162, Percent_Identity=31.4814814814815, Blast_Score=83, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR008965 - InterPro: IPR004866 - InterPro: IPR012291 - InterPro: IPR013812 - InterPro: IPR001540 - InterPro: IPR004867 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR014756 [H]
Pfam domain/function: PF03173 CHB_HEX; PF03174 CHB_HEX_C; PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 97799; Mature: 97799
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKRNLLSVAVLAGLTGCAVTQAPEQQVVNALADNLDVQYEILTNHGANEGMACQDLGAE CCCHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHCCC WASCNKVNMTLTNDGEAIDSKDWTIYFHSIRLILDVDNEQFKITRVTGDLHKLEPTDKFD HHCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCHHCCCCCCCCC GFAAGEEVILPLTSEYWQLFETDFMPGAFVTAPNAEPKMIASLNTEDVASFVTGLEGNNL CCCCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCEEEECCHHHHHHHHHCCCCCCC KRTPDDNNVMATAVTRFEKNADLATQDVSTTLLPTPMSVEAGEGSVSIAGGIALPKEAFD CCCCCCCCEEEEEEHHHHCCCCCCCCCCCCEECCCCCEEECCCCCEEEECCCCCCHHHCC AEQFAAIEERADVVNVDVSGDLPVSVAVVPTQFTGDLAKSGAYELSISEEGIAIKAFDKT HHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCCHHHHCCCEEEEECCCCEEEEEECCC GAFYAVQSIFGLIDSQNAESLPQLSIKDAPRFDYRGVMVDVARNFHSKDAILATLDQMAA CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCHHHHHHHHHHHH YKMNKLHLHLTDDEGWRLEIPGLPELTDVGSNRCFDLEEQSCLLPQLGSGPTTDNFGSGF HCCCEEEEEEECCCCCEEECCCCCCHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC FSKADYVEILSYAKARSIEVIPEIDMPAHARSAVVSMEARYTRLMAEGKEAEASEYRLMD CCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC PQDTSNVTTIQFYDKHSFINPCMESSTRFVDKVITEIAAMHNEAGMPLTTWHFGGDEAKN CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCE IKLGAGFQDVDAQDKVAWKGNIELDKQDKPFQQSPQCQSLIADGSVSDFGHLPGYFAKEV EEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCHHHHHCCCCCCHHCCCCCHHHHHH SKIVADKGIPHFQAWQDGLKYVEEGESGFATETTRVNFWDVLYWGGTSSVYDWSAKGYDV HHHHHHCCCCCHHHHHHHHHHHHCCCCCCEECEEEEEEEEEEEECCCCCEEECCCCCEEE IVSNPDYVYMDMPYEVDAAERGYYWATRATDTRKMFGFAPENMPQNAETSLDRDGNGFTG EECCCCEEEEECCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC KGEIEAKPFYGLSAQLWSETVRTDEQYEYMVFPRVLAAAERAWHRADWENDYKVGVEYSQ CCCEECCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEEECC DTDLVNKQSLNYDFNRFANIVGQRELAKLEKAGIDYRLPVPGAKVIDGKLAMNVQFPGVE CCCCCCHHCCCCCHHHHHHHHCHHHHHHHHHCCCCEECCCCCCEEECCEEEEEEECCCEE LQYSADGENWLTYDEQQRPSVSGETYIRSISESGEKVSRVTSVK EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCC >Mature Secondary Structure MLKRNLLSVAVLAGLTGCAVTQAPEQQVVNALADNLDVQYEILTNHGANEGMACQDLGAE CCCHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHCCC WASCNKVNMTLTNDGEAIDSKDWTIYFHSIRLILDVDNEQFKITRVTGDLHKLEPTDKFD HHCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCHHCCCCCCCCC GFAAGEEVILPLTSEYWQLFETDFMPGAFVTAPNAEPKMIASLNTEDVASFVTGLEGNNL CCCCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCEEEECCHHHHHHHHHCCCCCCC KRTPDDNNVMATAVTRFEKNADLATQDVSTTLLPTPMSVEAGEGSVSIAGGIALPKEAFD CCCCCCCCEEEEEEHHHHCCCCCCCCCCCCEECCCCCEEECCCCCEEEECCCCCCHHHCC AEQFAAIEERADVVNVDVSGDLPVSVAVVPTQFTGDLAKSGAYELSISEEGIAIKAFDKT HHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCCHHHHCCCEEEEECCCCEEEEEECCC GAFYAVQSIFGLIDSQNAESLPQLSIKDAPRFDYRGVMVDVARNFHSKDAILATLDQMAA CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCHHHHHHHHHHHH YKMNKLHLHLTDDEGWRLEIPGLPELTDVGSNRCFDLEEQSCLLPQLGSGPTTDNFGSGF HCCCEEEEEEECCCCCEEECCCCCCHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC FSKADYVEILSYAKARSIEVIPEIDMPAHARSAVVSMEARYTRLMAEGKEAEASEYRLMD CCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC PQDTSNVTTIQFYDKHSFINPCMESSTRFVDKVITEIAAMHNEAGMPLTTWHFGGDEAKN CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCE IKLGAGFQDVDAQDKVAWKGNIELDKQDKPFQQSPQCQSLIADGSVSDFGHLPGYFAKEV EEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCHHHHHCCCCCCHHCCCCCHHHHHH SKIVADKGIPHFQAWQDGLKYVEEGESGFATETTRVNFWDVLYWGGTSSVYDWSAKGYDV HHHHHHCCCCCHHHHHHHHHHHHCCCCCCEECEEEEEEEEEEEECCCCCEEECCCCCEEE IVSNPDYVYMDMPYEVDAAERGYYWATRATDTRKMFGFAPENMPQNAETSLDRDGNGFTG EECCCCEEEEECCCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC KGEIEAKPFYGLSAQLWSETVRTDEQYEYMVFPRVLAAAERAWHRADWENDYKVGVEYSQ CCCEECCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEEECC DTDLVNKQSLNYDFNRFANIVGQRELAKLEKAGIDYRLPVPGAKVIDGKLAMNVQFPGVE CCCCCCHHCCCCCHHHHHHHHCHHHHHHHHHCCCCEECCCCCCEEECCEEEEEEECCCEE LQYSADGENWLTYDEQQRPSVSGETYIRSISESGEKVSRVTSVK EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2670926 [H]