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The map label for this gene is ybaK [H]

Identifier: 218708761

GI number: 218708761

Start: 779720

End: 780193

Strand: Direct

Name: ybaK [H]

Synonym: VS_0758

Alternate gene names: 218708761

Gene position: 779720-780193 (Clockwise)

Preceding gene: 218708760

Following gene: 218708767

Centisome position: 23.63

GC content: 43.67

Gene sequence:

>474_bases
ATGACCCCTGCAATCAATCTCGCCAAGAAAAAGAAAATCGCTCACAGTGTGCATCAGTATCATCATGATGCGAATAACAC
GAATTATGGATTAGAGGCTGTCGAAGCGCTTGGTCAAGATCCCAAACGTGTATTCAAAACGCTTTTGTTTAGCTTGAATG
GTGTGGCGAAAGATTTGGCGGTAGCTGTTATTCCTGTTGACCAGAAGTTAAACCTTAAGCTTGCAGCTAAAGCAGCGAAA
GGTAAAAAAGCAGAGATGGCTGATCCAGATATTGCTCAGAAAACGACAGGTTATGTGGTGGGAGGAATCAGTCCTCTTGG
TCAGAAAAAATCATTACCTACCTTTGTTCATTCCAGCGCTACCGATTTTGAAACGATATGTGTGAGTGCAGGGAAGAGAG
GGTTAGAGATCGAGCTAGACCCGAAAGACTTAGTACTACTTACGCGTGGTCAGTTTGCTGAACTATGCTTGTAG

Upstream 100 bases:

>100_bases
ATCACTAGGTGCTAAATTAGATTGACTCTAGCACCATGATAAATTTAACTAAAGCGACGCCTCGGCGTCGCTTTTTGTTT
ATCTATCGTTTGGATTTGTT

Downstream 100 bases:

>100_bases
CTTGCGCTTTCCATAACGATAAACGTACATGATCATAAATAAAACGCCCGCTAGACTAATCTAGCGGGCGTTTCTTTATC
GACAGTCCCGTTTGAAAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTPAINLAKKKKIAHSVHQYHHDANNTNYGLEAVEALGQDPKRVFKTLLFSLNGVAKDLAVAVIPVDQKLNLKLAAKAAK
GKKAEMADPDIAQKTTGYVVGGISPLGQKKSLPTFVHSSATDFETICVSAGKRGLEIELDPKDLVLLTRGQFAELCL

Sequences:

>Translated_157_residues
MTPAINLAKKKKIAHSVHQYHHDANNTNYGLEAVEALGQDPKRVFKTLLFSLNGVAKDLAVAVIPVDQKLNLKLAAKAAK
GKKAEMADPDIAQKTTGYVVGGISPLGQKKSLPTFVHSSATDFETICVSAGKRGLEIELDPKDLVLLTRGQFAELCL
>Mature_156_residues
TPAINLAKKKKIAHSVHQYHHDANNTNYGLEAVEALGQDPKRVFKTLLFSLNGVAKDLAVAVIPVDQKLNLKLAAKAAKG
KKAEMADPDIAQKTTGYVVGGISPLGQKKSLPTFVHSSATDFETICVSAGKRGLEIELDPKDLVLLTRGQFAELCL

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=156, Percent_Identity=54.4871794871795, Blast_Score=169, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16876; Mature: 16745

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAINLAKKKKIAHSVHQYHHDANNTNYGLEAVEALGQDPKRVFKTLLFSLNGVAKDLA
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHE
VAVIPVDQKLNLKLAAKAAKGKKAEMADPDIAQKTTGYVVGGISPLGQKKSLPTFVHSSA
EEEEECCCCCCEEEEEECCCCCCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCHHHHCCC
TDFETICVSAGKRGLEIELDPKDLVLLTRGQFAELCL
CCHHHHHHHCCCCCCEEEECCCCEEEEECCCHHHHCC
>Mature Secondary Structure 
TPAINLAKKKKIAHSVHQYHHDANNTNYGLEAVEALGQDPKRVFKTLLFSLNGVAKDLA
CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHE
VAVIPVDQKLNLKLAAKAAKGKKAEMADPDIAQKTTGYVVGGISPLGQKKSLPTFVHSSA
EEEEECCCCCCEEEEEECCCCCCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCHHHHCCC
TDFETICVSAGKRGLEIELDPKDLVLLTRGQFAELCL
CCHHHHHHHCCCCCCEEEECCCCEEEEECCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]