Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
---|---|
Accession | NC_011753 |
Length | 3,299,303 |
Click here to switch to the map view.
The map label for this gene is 218708618
Identifier: 218708618
GI number: 218708618
Start: 620632
End: 621132
Strand: Reverse
Name: 218708618
Synonym: VS_0596
Alternate gene names: NA
Gene position: 621132-620632 (Counterclockwise)
Preceding gene: 218708619
Following gene: 218708617
Centisome position: 18.83
GC content: 39.32
Gene sequence:
>501_bases ATGATATTTATGAGTTTAAAGAAATTGCTGTCCTTAGGTTTTGGCGTGATTCTCGCGCTAATTTTGGTTATTTCAGTCGT TGCTTCATTACGCTTTTATCAATCGAGTGATGGGTTTAACACCTACCGCTCTCTTGCAATAACAAGTGTCTCAACAGGTC GAATCCAAGCCAATATTCTGGAAGCTCGTTTATCTGCACTTAAATATATTAAGAACCCTATTCCGTCACATGCTTCTGAA CTGAATAGACGTATCACCGCATCAAATCAATTGATAGATGAAATATTAGACTCTCATCTTGACGATCTACACAAAAATGA ATTCCTAACGATAAAGAAGCAGCTTGATCAATATAGCCAAGGCTTTAACAAGGTTGTTCAACTTGTCAATACTCGAAACA ACCTAGTTCAAGAGGCCTTAGACCCATCAGGGGTCAATATGCGTGAGGCAGTGACCAACCTAATGACCCAAGCTTCAGCT GAAGAGCTGAAGAAGATTTAG
Upstream 100 bases:
>100_bases AGATATCAAAATATAGTGGATACATACTATTTATTGATATATTTATCGTTAGAATCATGTAAGAATTTGTTAAGAATAAA AACAAGCTGCCTTACTAGGA
Downstream 100 bases:
>100_bases AAGTTGCTGTCAGTTCAGGACAGCTTCAGCAGCATGTATTGCTATCAAGATTGTACGCTTCTAAATTTCTGACGAGCAAT AAAACAGAAGATGCTCAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 166; Mature: 166
Protein sequence:
>166_residues MIFMSLKKLLSLGFGVILALILVISVVASLRFYQSSDGFNTYRSLAITSVSTGRIQANILEARLSALKYIKNPIPSHASE LNRRITASNQLIDEILDSHLDDLHKNEFLTIKKQLDQYSQGFNKVVQLVNTRNNLVQEALDPSGVNMREAVTNLMTQASA EELKKI
Sequences:
>Translated_166_residues MIFMSLKKLLSLGFGVILALILVISVVASLRFYQSSDGFNTYRSLAITSVSTGRIQANILEARLSALKYIKNPIPSHASE LNRRITASNQLIDEILDSHLDDLHKNEFLTIKKQLDQYSQGFNKVVQLVNTRNNLVQEALDPSGVNMREAVTNLMTQASA EELKKI >Mature_166_residues MIFMSLKKLLSLGFGVILALILVISVVASLRFYQSSDGFNTYRSLAITSVSTGRIQANILEARLSALKYIKNPIPSHASE LNRRITASNQLIDEILDSHLDDLHKNEFLTIKKQLDQYSQGFNKVVQLVNTRNNLVQEALDPSGVNMREAVTNLMTQASA EELKKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18549; Mature: 18549
Theoretical pI: Translated: 9.75; Mature: 9.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFMSLKKLLSLGFGVILALILVISVVASLRFYQSSDGFNTYRSLAITSVSTGRIQANIL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH EARLSALKYIKNPIPSHASELNRRITASNQLIDEILDSHLDDLHKNEFLTIKKQLDQYSQ HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFNKVVQLVNTRNNLVQEALDPSGVNMREAVTNLMTQASAEELKKI HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIFMSLKKLLSLGFGVILALILVISVVASLRFYQSSDGFNTYRSLAITSVSTGRIQANIL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH EARLSALKYIKNPIPSHASELNRRITASNQLIDEILDSHLDDLHKNEFLTIKKQLDQYSQ HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFNKVVQLVNTRNNLVQEALDPSGVNMREAVTNLMTQASAEELKKI HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA