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The map label for this gene is yfiO [C]

Identifier: 218708593

GI number: 218708593

Start: 585079

End: 585807

Strand: Reverse

Name: yfiO [C]

Synonym: VS_0559

Alternate gene names: 218708593

Gene position: 585807-585079 (Counterclockwise)

Preceding gene: 218708599

Following gene: 218708592

Centisome position: 17.76

GC content: 43.9

Gene sequence:

>729_bases
ATGAAACACCTTACTTTAACGGGTCTATTAGCCGTATCACTCTTAGTTGGTTGTTCAAGTAGTGAAGAAATAGTACCGGA
TGTACCGCCATCGGTTCTTTACTCTGACGCCCAAGAATCACTGCAGAGTGGTAGCTGGCTTTCTGCAATCGAAAAGCTAG
AAGCCTTAGACTCACGTTACCCATTCGGCGCCTATTCTGAACAAGTACAACTGGATCTGATTTACGCTTACTACAAAAAT
GATGACTTGGCGCTTGGCCTTGCGACTATTTCGCGATTCCTACGTTTAAACCCAACTCATGAGAAACAAGATTGGGTTCT
TTACATGCGCGGTTTAACGCATATGGCACAAGACCGAAACTTCATGCATGATATTTTTAATATCGATCGTAGCGACCGAG
ATCCAGAGCCAGTGAAACTTGCATTTGCTGATTTCAAACGACTGTTAGAACGTTTCCCTGCAAGCCCATACGCTGAAGAT
GCACAAAAACGCATGTTCGCACTGAAAAACCGCCTAGCGGAGTATGACTTAGCAACCGCTGATTTCTACCTGCGTCGTGA
AGCTTGGATTGCAGCTATAAACAGAACACAAGAGTTACAGAAGACTTACCCTGACACCATTGCTGCACGTAAGTCTTTAG
ACATTCAATTAGAAGCTTATGAACAACTAGGCTTAGAAGACGCAGTGTTACGAACAGAAAAGTTAATCGAGCTCAATCCA
CTGCCTTAG

Upstream 100 bases:

>100_bases
TAGTATGGATAAAATAGAATAATTGCATCATTGTATCTGTTACTGGTTAGAAAGTAACGGAAGCTTACGAAATATTTAAT
TCAAGGAATCGACGCCTGAC

Downstream 100 bases:

>100_bases
TCAGCGAATCACACTCGTCGTTAACTAAAACAATCACTTCAAAATCGCGCTAATTTGTTAGCGCGATTTTTTTTGAACTT
CGTCTGGTAAACTTGATGAA

Product: hypothetical lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MKHLTLTGLLAVSLLVGCSSSEEIVPDVPPSVLYSDAQESLQSGSWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFLRLNPTHEKQDWVLYMRGLTHMAQDRNFMHDIFNIDRSDRDPEPVKLAFADFKRLLERFPASPYAED
AQKRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTIAARKSLDIQLEAYEQLGLEDAVLRTEKLIELNP
LP

Sequences:

>Translated_242_residues
MKHLTLTGLLAVSLLVGCSSSEEIVPDVPPSVLYSDAQESLQSGSWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFLRLNPTHEKQDWVLYMRGLTHMAQDRNFMHDIFNIDRSDRDPEPVKLAFADFKRLLERFPASPYAED
AQKRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTIAARKSLDIQLEAYEQLGLEDAVLRTEKLIELNP
LP
>Mature_242_residues
MKHLTLTGLLAVSLLVGCSSSEEIVPDVPPSVLYSDAQESLQSGSWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFLRLNPTHEKQDWVLYMRGLTHMAQDRNFMHDIFNIDRSDRDPEPVKLAFADFKRLLERFPASPYAED
AQKRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTIAARKSLDIQLEAYEQLGLEDAVLRTEKLIELNP
LP

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=239, Percent_Identity=50.2092050209205, Blast_Score=253, Evalue=8e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27752; Mature: 27752

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHLTLTGLLAVSLLVGCSSSEEIVPDVPPSVLYSDAQESLQSGSWLSAIEKLEALDSRY
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
PFGAYSEQVQLDLIYAYYKNDDLALGLATISRFLRLNPTHEKQDWVLYMRGLTHMAQDRN
CCCCCCCCEEEEEEEEEECCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
FMHDIFNIDRSDRDPEPVKLAFADFKRLLERFPASPYAEDAQKRMFALKNRLAEYDLATA
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
DFYLRREAWIAAINRTQELQKTYPDTIAARKSLDIQLEAYEQLGLEDAVLRTEKLIELNP
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEHHHHHCCHHHHHHHHHHHCCCCC
LP
CC
>Mature Secondary Structure
MKHLTLTGLLAVSLLVGCSSSEEIVPDVPPSVLYSDAQESLQSGSWLSAIEKLEALDSRY
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
PFGAYSEQVQLDLIYAYYKNDDLALGLATISRFLRLNPTHEKQDWVLYMRGLTHMAQDRN
CCCCCCCCEEEEEEEEEECCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
FMHDIFNIDRSDRDPEPVKLAFADFKRLLERFPASPYAEDAQKRMFALKNRLAEYDLATA
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
DFYLRREAWIAAINRTQELQKTYPDTIAARKSLDIQLEAYEQLGLEDAVLRTEKLIELNP
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEHHHHHCCHHHHHHHHHHHCCCCC
LP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]