| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218708414
Identifier: 218708414
GI number: 218708414
Start: 375320
End: 376147
Strand: Reverse
Name: 218708414
Synonym: VS_0376
Alternate gene names: NA
Gene position: 376147-375320 (Counterclockwise)
Preceding gene: 218708415
Following gene: 218708411
Centisome position: 11.4
GC content: 42.03
Gene sequence:
>828_bases ATGGTAAGCCTTAAGGTCTTAGTAGTCAGTCATCAGGAGAATGCCATGAAACAACTACTTTTTATTGTCAGCCTACTTTT CTCAACCTTAGCTTGGTCTGCGCCTAAATCCGATCTTTGGCCATACTGGAACCAAAGCGACGAAACCAATCTAGAACAGG TATCTCACCAAGATTGGCAGCAATTTCTCGATAACTACTTAGTTCAACAAGGGCAAAATACCCTAGTTCGCTATAAAGCA GTGAACACTGCCGATAAGACAAAACTCAATCAATACATCAAGCAACTCGAACAGGTTAATCCGCTCGACTATTCAAAAGC GGAGCAGTATGCCTATTGGGTTAATCTATATAACGCCGTGACTGTCGATTTGATTCTTGATGCCTACCCGATCAAATCCA TCACTAAACTTGGCGGACTATTTAGTTTTGGGCCGTGGGGAGATGATGTGGTAATCGTTAACGGAAAATCACTGACACTC AACGATATTGAACACCGAATCCTAAGACCGATTTGGCAAGATCCGCGCACTCATTATGCGGTGAATTGTGCGAGTTTGGG TTGCCCTAACTTGCAACCTCAGGCCTTTACTGCTGACAAAACTGATATGTTATTGGAGCTTGCTGCATCTGAGTATGTAA ACAGTGATAAGGGTGTATTGGTTAGCAACAGCAAACTACAACTATCATCGATTTACGAATGGTTTGCTGTGGATTTTGGT ACAGAGAAACAGCTCATTCAGCACTTAGACCAATATCGAACTCAACCTGTCACGAATATTAACAAAATCAGTTATGACTA TGATTGGTCGCTTAACCAAGCAAACTAG
Upstream 100 bases:
>100_bases GTGTTCATATAAAAGGTTGGCTTAGCGCCAACCTTTTTTATTTGGCTAAGCTTTTAACTTAACTTCATATGTTTATTTAA ATGAAGAGCATTGAAAGAAA
Downstream 100 bases:
>100_bases TTTTAACGTTAAAGCTCATGAATGCAGCTAAACAAAAAAGAGGCGAAAGGTTTTTATTAACCACTTGCCTCTTTTTTATC TATTGAACCGTATTTCTACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 275; Mature: 275
Protein sequence:
>275_residues MVSLKVLVVSHQENAMKQLLFIVSLLFSTLAWSAPKSDLWPYWNQSDETNLEQVSHQDWQQFLDNYLVQQGQNTLVRYKA VNTADKTKLNQYIKQLEQVNPLDYSKAEQYAYWVNLYNAVTVDLILDAYPIKSITKLGGLFSFGPWGDDVVIVNGKSLTL NDIEHRILRPIWQDPRTHYAVNCASLGCPNLQPQAFTADKTDMLLELAASEYVNSDKGVLVSNSKLQLSSIYEWFAVDFG TEKQLIQHLDQYRTQPVTNINKISYDYDWSLNQAN
Sequences:
>Translated_275_residues MVSLKVLVVSHQENAMKQLLFIVSLLFSTLAWSAPKSDLWPYWNQSDETNLEQVSHQDWQQFLDNYLVQQGQNTLVRYKA VNTADKTKLNQYIKQLEQVNPLDYSKAEQYAYWVNLYNAVTVDLILDAYPIKSITKLGGLFSFGPWGDDVVIVNGKSLTL NDIEHRILRPIWQDPRTHYAVNCASLGCPNLQPQAFTADKTDMLLELAASEYVNSDKGVLVSNSKLQLSSIYEWFAVDFG TEKQLIQHLDQYRTQPVTNINKISYDYDWSLNQAN >Mature_275_residues MVSLKVLVVSHQENAMKQLLFIVSLLFSTLAWSAPKSDLWPYWNQSDETNLEQVSHQDWQQFLDNYLVQQGQNTLVRYKA VNTADKTKLNQYIKQLEQVNPLDYSKAEQYAYWVNLYNAVTVDLILDAYPIKSITKLGGLFSFGPWGDDVVIVNGKSLTL NDIEHRILRPIWQDPRTHYAVNCASLGCPNLQPQAFTADKTDMLLELAASEYVNSDKGVLVSNSKLQLSSIYEWFAVDFG TEKQLIQHLDQYRTQPVTNINKISYDYDWSLNQAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31580; Mature: 31580
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSLKVLVVSHQENAMKQLLFIVSLLFSTLAWSAPKSDLWPYWNQSDETNLEQVSHQDWQ CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH QFLDNYLVQQGQNTLVRYKAVNTADKTKLNQYIKQLEQVNPLDYSKAEQYAYWVNLYNAV HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH TVDLILDAYPIKSITKLGGLFSFGPWGDDVVIVNGKSLTLNDIEHRILRPIWQDPRTHYA EEHHHHCCCCHHHHHHHCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHHHHHCCCCCEEE VNCASLGCPNLQPQAFTADKTDMLLELAASEYVNSDKGVLVSNSKLQLSSIYEWFAVDFG EEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCC TEKQLIQHLDQYRTQPVTNINKISYDYDWSLNQAN CHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC >Mature Secondary Structure MVSLKVLVVSHQENAMKQLLFIVSLLFSTLAWSAPKSDLWPYWNQSDETNLEQVSHQDWQ CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH QFLDNYLVQQGQNTLVRYKAVNTADKTKLNQYIKQLEQVNPLDYSKAEQYAYWVNLYNAV HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH TVDLILDAYPIKSITKLGGLFSFGPWGDDVVIVNGKSLTLNDIEHRILRPIWQDPRTHYA EEHHHHCCCCHHHHHHHCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHHHHHCCCCCEEE VNCASLGCPNLQPQAFTADKTDMLLELAASEYVNSDKGVLVSNSKLQLSSIYEWFAVDFG EEEHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCC TEKQLIQHLDQYRTQPVTNINKISYDYDWSLNQAN CHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA