| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is lptD [H]
Identifier: 218708411
GI number: 218708411
Start: 371212
End: 373611
Strand: Reverse
Name: lptD [H]
Synonym: VS_0373
Alternate gene names: 218708411
Gene position: 373611-371212 (Counterclockwise)
Preceding gene: 218708414
Following gene: 218708410
Centisome position: 11.32
GC content: 41.75
Gene sequence:
>2400_bases ATGCAATCTTTTTCCCGCACCTTGTTAGCCGCGTCTATAAGTACGGCATTATACGTATCGACAACTCAAGCTGAAACAAC CACCGATAATAGTGTGCAGGAAATGCCCGCTATAGGTCAATGCTTGATCAAACCCTCGAAAGATCCTATCGACCAATGCA GAGTTCAACCCGTATCAGAAAACGATACACAACTGCCAGCTCACGTTGAGTCTGATCGTTTAGAAGCGATCAATGGCGAC AAAGCAATCTACTCAGGTGATGTAAGAGTCACGCAAGGAATCAAAATCATTCTTGCTGACAATGTGACGCTTCACCAACA AGAAAATATCGTTGTAGCTGAAGGCAACGTAAACTTTAGTGATGGTCAAATTAAATCAGTTTCAGAAAGAGCAACCAATA ATCTGACTACCGATGAAATGACGCTCGAAAATACCAATTATGAATTCCTCTGTGAGCAAGGCAGAGGAGAGGCGGTTTAT ATCGCGAATACAGGTAAAGCCGTCTATGAAATCGAAGACGGCTCAATCACCTCTTGCCCTATCGGCGACAATGCATGGCG ACTAAGAGCATCAAGTATCGATGTCGACCAAAATGAAGAAGAGGCTACGTTCTACAATCCAAGGTTTGAAATTCAGAGTG TTCCTGTTTTTTACCTGCCTTACTTAACCGTTCCGATTGGTGATACACGTAAAACAGGTTTCTTATATCCAACGGTGTCA TATGGCTCAAGTGATGGCTTTGAATTTGAGATCCCTGTTTATTGGAACTTGGCACCAGAGTATGACCTGAAAACCACCTT TAAACACATGAAAGAACGTGGTACTCAGCTTAACAGTGAATTTAGATATTTGAGCGATTTTGGTTCCGGGATGATTAAGT CTGAATACTTACCTGATGACAAAAAATACCCAGAGAAAGGCAAACGTTGGGGCGCTCAGCTAGCTCACTCAGGAATATTC CAAGAATCTTGGCTATTTGAAATTGATTACTCAAAAGTTGGTGATATCGAGTACTTCACGGATGTCAACGGAAGCGGTAT TGGTAACCGCGAAGACGGTCAGCTGCTTCAAGAAGGGCAGGCTACATATCGTTCTCAAAATTGGGATGCCTCTGTACTTG TGCGAGATTTTCAGGTCCTCACAAATACGACAAACAACCTTCCATACCGCCTGCTCCCACAGCTTGAATATAACTATTAT GCCCCCGAGGTAATGGAGTATTTAGATTTCGACTTAGTCAGCCATGTATCTCTGTTTGATACAGATGCAAAAGGCAAACC ATCTGCAACTCGTATTCACGTTGAGCCGGGTATTACTATCCCTGTAGGCAATACATGGGGAACATGGACAACAGAAGCTC GCTTACTTGGAACATACTATCAACAAGATCTTGATGGTGTAGATACGACAACGGGAACCAAAAAAACGAACCCCAATTAC GGCCTCGAAGAGAAAGTATCTCGTGTAATACCTGAGTTTAGAAGCCATGCTGGCATTGTTTTAGAAAGAGATACAAAAAT TATTGGCGACTACACTCAAACTCTAGAACCTCAAATTCAATATTTATACGTGCCTGAAAAAGAGCAAGACAACATCGGCC TATACGACACGACACTACTACAAACCGACTACTACGGCCTGTTTAGAAGCCGTAAATACAGTGGTGTAGATCATATCGCT GCAGCTAACCAAGTTAGCTATGGAGCATCCTCTCGTTTCTTTGATGATGAATATAAAGAACGTCTCAATATTTCTTTTGG ACAGATCTTTTATATCGACAAAGATACAAAACAACATCTAACACTTGATACTAAAGATAAGAACTCGAATTACTCATCTT GGGCTGTAGAAGTCGACTTTAATTACGACGACTACCTGTTTTATCATGGTGGTGTACAGTACGACATCGATACCACAGCA ATGCAACTAGCCAACAGCACCATTGAGTACCGTTTTTCTGGTGGTTATATCCAAACCAACTACCGCTACGTAACCAAAGA GTATATCGAAGACACTGTTGATTTTAATGTTGGATCGATTACTAAAGATGGTATATCTCAAGCAGGATTACTCGGCTCTT ATAAGATTTCGCGTAAATGGAGTGCCAGCGCTCAGTATTTCTATGATTTAACAACCGAAGAGAACCTTGAGTGGTTAGCT AAACTCAATTACAAGTCCGATTGTTGGTATATCGGCTTCACCTATAGTAACCAATTGCGTAGATGGGAAGGTGATTACAT CAACACATCGAATGCGACACCAGTATACGAGAAAAACTTTGGCTTTAACTTCGGTATTGTTGGCTTTGGTACCAACATAG GCTCTGATTCAAGCGAAGTAAGTGAAACAAGCTCAAGTAACGCACTCAGCTACGGTCGCCCATTCTTCTTAAACAACTAA
Upstream 100 bases:
>100_bases GCTGAATGCTAATATTTCCTTTATCATAAGGAAAATGCTTTATTAATTGGATTGATACTAGATCAACCCTTCATCTAGTG ACACAGGATAGTTCAACTTC
Downstream 100 bases:
>100_bases TTTTCTTTATTGATAACACATCGGTAAATATAAAGGATTACACATGACATTGTGGAAACGCACATTAATAGCTATCGCAG CGGCTTGTACTTTATCAACA
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 799; Mature: 799
Protein sequence:
>799_residues MQSFSRTLLAASISTALYVSTTQAETTTDNSVQEMPAIGQCLIKPSKDPIDQCRVQPVSENDTQLPAHVESDRLEAINGD KAIYSGDVRVTQGIKIILADNVTLHQQENIVVAEGNVNFSDGQIKSVSERATNNLTTDEMTLENTNYEFLCEQGRGEAVY IANTGKAVYEIEDGSITSCPIGDNAWRLRASSIDVDQNEEEATFYNPRFEIQSVPVFYLPYLTVPIGDTRKTGFLYPTVS YGSSDGFEFEIPVYWNLAPEYDLKTTFKHMKERGTQLNSEFRYLSDFGSGMIKSEYLPDDKKYPEKGKRWGAQLAHSGIF QESWLFEIDYSKVGDIEYFTDVNGSGIGNREDGQLLQEGQATYRSQNWDASVLVRDFQVLTNTTNNLPYRLLPQLEYNYY APEVMEYLDFDLVSHVSLFDTDAKGKPSATRIHVEPGITIPVGNTWGTWTTEARLLGTYYQQDLDGVDTTTGTKKTNPNY GLEEKVSRVIPEFRSHAGIVLERDTKIIGDYTQTLEPQIQYLYVPEKEQDNIGLYDTTLLQTDYYGLFRSRKYSGVDHIA AANQVSYGASSRFFDDEYKERLNISFGQIFYIDKDTKQHLTLDTKDKNSNYSSWAVEVDFNYDDYLFYHGGVQYDIDTTA MQLANSTIEYRFSGGYIQTNYRYVTKEYIEDTVDFNVGSITKDGISQAGLLGSYKISRKWSASAQYFYDLTTEENLEWLA KLNYKSDCWYIGFTYSNQLRRWEGDYINTSNATPVYEKNFGFNFGIVGFGTNIGSDSSEVSETSSSNALSYGRPFFLNN
Sequences:
>Translated_799_residues MQSFSRTLLAASISTALYVSTTQAETTTDNSVQEMPAIGQCLIKPSKDPIDQCRVQPVSENDTQLPAHVESDRLEAINGD KAIYSGDVRVTQGIKIILADNVTLHQQENIVVAEGNVNFSDGQIKSVSERATNNLTTDEMTLENTNYEFLCEQGRGEAVY IANTGKAVYEIEDGSITSCPIGDNAWRLRASSIDVDQNEEEATFYNPRFEIQSVPVFYLPYLTVPIGDTRKTGFLYPTVS YGSSDGFEFEIPVYWNLAPEYDLKTTFKHMKERGTQLNSEFRYLSDFGSGMIKSEYLPDDKKYPEKGKRWGAQLAHSGIF QESWLFEIDYSKVGDIEYFTDVNGSGIGNREDGQLLQEGQATYRSQNWDASVLVRDFQVLTNTTNNLPYRLLPQLEYNYY APEVMEYLDFDLVSHVSLFDTDAKGKPSATRIHVEPGITIPVGNTWGTWTTEARLLGTYYQQDLDGVDTTTGTKKTNPNY GLEEKVSRVIPEFRSHAGIVLERDTKIIGDYTQTLEPQIQYLYVPEKEQDNIGLYDTTLLQTDYYGLFRSRKYSGVDHIA AANQVSYGASSRFFDDEYKERLNISFGQIFYIDKDTKQHLTLDTKDKNSNYSSWAVEVDFNYDDYLFYHGGVQYDIDTTA MQLANSTIEYRFSGGYIQTNYRYVTKEYIEDTVDFNVGSITKDGISQAGLLGSYKISRKWSASAQYFYDLTTEENLEWLA KLNYKSDCWYIGFTYSNQLRRWEGDYINTSNATPVYEKNFGFNFGIVGFGTNIGSDSSEVSETSSSNALSYGRPFFLNN >Mature_799_residues MQSFSRTLLAASISTALYVSTTQAETTTDNSVQEMPAIGQCLIKPSKDPIDQCRVQPVSENDTQLPAHVESDRLEAINGD KAIYSGDVRVTQGIKIILADNVTLHQQENIVVAEGNVNFSDGQIKSVSERATNNLTTDEMTLENTNYEFLCEQGRGEAVY IANTGKAVYEIEDGSITSCPIGDNAWRLRASSIDVDQNEEEATFYNPRFEIQSVPVFYLPYLTVPIGDTRKTGFLYPTVS YGSSDGFEFEIPVYWNLAPEYDLKTTFKHMKERGTQLNSEFRYLSDFGSGMIKSEYLPDDKKYPEKGKRWGAQLAHSGIF QESWLFEIDYSKVGDIEYFTDVNGSGIGNREDGQLLQEGQATYRSQNWDASVLVRDFQVLTNTTNNLPYRLLPQLEYNYY APEVMEYLDFDLVSHVSLFDTDAKGKPSATRIHVEPGITIPVGNTWGTWTTEARLLGTYYQQDLDGVDTTTGTKKTNPNY GLEEKVSRVIPEFRSHAGIVLERDTKIIGDYTQTLEPQIQYLYVPEKEQDNIGLYDTTLLQTDYYGLFRSRKYSGVDHIA AANQVSYGASSRFFDDEYKERLNISFGQIFYIDKDTKQHLTLDTKDKNSNYSSWAVEVDFNYDDYLFYHGGVQYDIDTTA MQLANSTIEYRFSGGYIQTNYRYVTKEYIEDTVDFNVGSITKDGISQAGLLGSYKISRKWSASAQYFYDLTTEENLEWLA KLNYKSDCWYIGFTYSNQLRRWEGDYINTSNATPVYEKNFGFNFGIVGFGTNIGSDSSEVSETSSSNALSYGRPFFLNN
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=815, Percent_Identity=36.5644171779141, Blast_Score=481, Evalue=1e-137,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 90670; Mature: 90670
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSFSRTLLAASISTALYVSTTQAETTTDNSVQEMPAIGQCLIKPSKDPIDQCRVQPVSE CCCHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHCCCCCCEEECCCCCCHHHHEECCCCC NDTQLPAHVESDRLEAINGDKAIYSGDVRVTQGIKIILADNVTLHQQENIVVAEGNVNFS CCCCCCCCCCCCCCEECCCCCEEEECCEEEECCEEEEEECCEEEEECCCEEEECCCCCCC DGQIKSVSERATNNLTTDEMTLENTNYEFLCEQGRGEAVYIANTGKAVYEIEDGSITSCP CCCCHHHHHHHCCCCCCCCEEEECCCEEEEEECCCCCEEEEEECCCEEEEECCCCEEECC IGDNAWRLRASSIDVDQNEEEATFYNPRFEIQSVPVFYLPYLTVPIGDTRKTGFLYPTVS CCCCCEEEEECCCCCCCCCCCCEEECCCEEEECCCEEEEEEEEEECCCCCCCCEEEEEEE YGSSDGFEFEIPVYWNLAPEYDLKTTFKHMKERGTQLNSEFRYLSDFGSGMIKSEYLPDD CCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEECCCCCCC KKYPEKGKRWGAQLAHSGIFQESWLFEIDYSKVGDIEYFTDVNGSGIGNREDGQLLQEGQ CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH ATYRSQNWDASVLVRDFQVLTNTTNNLPYRLLPQLEYNYYAPEVMEYLDFDLVSHVSLFD HHHCCCCCCCEEHEEHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHCHHHHHHEEEEC TDAKGKPSATRIHVEPGITIPVGNTWGTWTTEARLLGTYYQQDLDGVDTTTGTKKTNPNY CCCCCCCCCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC GLEEKVSRVIPEFRSHAGIVLERDTKIIGDYTQTLEPQIQYLYVPEKEQDNIGLYDTTLL CHHHHHHHHHHHHHCCCCEEEECCCEEECCHHHCCCCCEEEEECCCCCCCCCCEEEEEEE QTDYYGLFRSRKYSGVDHIAAANQVSYGASSRFFDDEYKERLNISFGQIFYIDKDTKQHL ECHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEECCCCCEE TLDTKDKNSNYSSWAVEVDFNYDDYLFYHGGVQYDIDTTAMQLANSTIEYRFSGGYIQTN EEECCCCCCCCCEEEEEEECCCCCEEEEECCEEEECCHHHHHHHCCEEEEEEECCEEEEC YRYVTKEYIEDTVDFNVGSITKDGISQAGLLGSYKISRKWSASAQYFYDLTTEENLEWLA EEEEEHHHHHHHCCCCCCCCCCCCHHHCCCEECEEECCCCCCCCEEEEEECCCCCCEEEE KLNYKSDCWYIGFTYSNQLRRWEGDYINTSNATPVYEKNFGFNFGIVGFGTNIGSDSSEV EECCCCCEEEEEEEECCCHHHCCCCEEECCCCCCEEECCCCCEEEEEEECCCCCCCCHHH SETSSSNALSYGRPFFLNN HHCCCCCCCCCCCCEEECC >Mature Secondary Structure MQSFSRTLLAASISTALYVSTTQAETTTDNSVQEMPAIGQCLIKPSKDPIDQCRVQPVSE CCCHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHCCCCCCEEECCCCCCHHHHEECCCCC NDTQLPAHVESDRLEAINGDKAIYSGDVRVTQGIKIILADNVTLHQQENIVVAEGNVNFS CCCCCCCCCCCCCCEECCCCCEEEECCEEEECCEEEEEECCEEEEECCCEEEECCCCCCC DGQIKSVSERATNNLTTDEMTLENTNYEFLCEQGRGEAVYIANTGKAVYEIEDGSITSCP CCCCHHHHHHHCCCCCCCCEEEECCCEEEEEECCCCCEEEEEECCCEEEEECCCCEEECC IGDNAWRLRASSIDVDQNEEEATFYNPRFEIQSVPVFYLPYLTVPIGDTRKTGFLYPTVS CCCCCEEEEECCCCCCCCCCCCEEECCCEEEECCCEEEEEEEEEECCCCCCCCEEEEEEE YGSSDGFEFEIPVYWNLAPEYDLKTTFKHMKERGTQLNSEFRYLSDFGSGMIKSEYLPDD CCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEECCCCCCC KKYPEKGKRWGAQLAHSGIFQESWLFEIDYSKVGDIEYFTDVNGSGIGNREDGQLLQEGQ CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH ATYRSQNWDASVLVRDFQVLTNTTNNLPYRLLPQLEYNYYAPEVMEYLDFDLVSHVSLFD HHHCCCCCCCEEHEEHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHCHHHHHHEEEEC TDAKGKPSATRIHVEPGITIPVGNTWGTWTTEARLLGTYYQQDLDGVDTTTGTKKTNPNY CCCCCCCCCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC GLEEKVSRVIPEFRSHAGIVLERDTKIIGDYTQTLEPQIQYLYVPEKEQDNIGLYDTTLL CHHHHHHHHHHHHHCCCCEEEECCCEEECCHHHCCCCCEEEEECCCCCCCCCCEEEEEEE QTDYYGLFRSRKYSGVDHIAAANQVSYGASSRFFDDEYKERLNISFGQIFYIDKDTKQHL ECHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEEEEECCCCCEE TLDTKDKNSNYSSWAVEVDFNYDDYLFYHGGVQYDIDTTAMQLANSTIEYRFSGGYIQTN EEECCCCCCCCCEEEEEEECCCCCEEEEECCEEEECCHHHHHHHCCEEEEEEECCEEEEC YRYVTKEYIEDTVDFNVGSITKDGISQAGLLGSYKISRKWSASAQYFYDLTTEENLEWLA EEEEEHHHHHHHCCCCCCCCCCCCHHHCCCEECEEECCCCCCCCEEEEEECCCCCCEEEE KLNYKSDCWYIGFTYSNQLRRWEGDYINTSNATPVYEKNFGFNFGIVGFGTNIGSDSSEV EECCCCCEEEEEEEECCCHHHCCCCEEECCCCCCEEECCCCCEEEEEEECCCCCCCCHHH SETSSSNALSYGRPFFLNN HHCCCCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]