| Definition | Escherichia coli IAI39 chromosome, complete genome. |
|---|---|
| Accession | NC_011750 |
| Length | 5,132,068 |
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The map label for this gene is pgaB
Identifier: 218700467
GI number: 218700467
Start: 2174433
End: 2176451
Strand: Direct
Name: pgaB
Synonym: ECIAI39_2133
Alternate gene names: 218700467
Gene position: 2174433-2176451 (Clockwise)
Preceding gene: 218700466
Following gene: 218700468
Centisome position: 42.37
GC content: 44.43
Gene sequence:
>2019_bases ATGTTACGTAATGGAAATAAATATATCCTGATGCTGGTGAGTATAATTATGCTCACTGCGTGCATTAGCCAGTCAAGAAC ATCATTTATACCGCCACAGGATCGCGAATCTTTACTCGCCGAGCAACCGTGGCCGCATAATGGTTTTGTGGCGATTTCAT GGCATAACGTTGAAGACGAAGCTGCCGACCAGCGTTTTATGTCAGTGCGGACATCAGCACTGCGTGAACAATTTGCCTGG CTGCGCGAGAACGGTTATCAACCGGTCAGTATTGCTCAAATTCGTGAAGCACATCGAGGAGGAAAACCGCTACCGGAAAA AGCAGTAGTGCTGACTTTTGATGACGGCTACCAGAGTTTTTATACCCGCGTCTTCCCAATTCTTCAGGCCTTCCAGTGGC CTGCTGTATGGGCCCCCGTCGGCAGTTGGGTCGATACGCCAGCGGATGAACAAGTAAAATTTGGCGATGAGATGGTCGAT CGAGAATATTTTGCCACGTGGCAACAAGTGCGAGAAGTTGCGCGTTCCCGGCTCGTTGAGGTCGCTTCTCATACATGGAA TTCTCACTACGGTATTCAGGCTAATGCCACCGGCAGCTTATTGCCTGTATATGTAAATCGTGCATATTTTACTGACCACG CACGGTATGAAACCGCAGCAGAATACCGGGAAAGAATTCGTCTGGATGCTGTAAAAATGACGGAATACCTGCGTACAAAG GCTGAGGTAAATCCACACGTTTTTGTTTGGCCTTATGGCGAAGCGAATGGCATAGCAATCGCGGAATTAAAAAAACTCGG TTATGACATGTTCTTCACCCTTGAATCAGGTTTGGCAAATGCGTCGCAATTAGATTCCATTCCGCGAGTATTAATCGCCA ATAATCCCTCATTAAAAGAGTTTGCCCAGCAAATTATTACCGTACAGGAAAAACCACTACAACGGGTAATGCATATCGAT CTTGATTACATTTATGACGAAAACCGCCAGCAAATGGATCGCAATATTGATGTGCTAATTCAGCGGGTAAAAGATATGCA AATATCTACCGTGTATTTACAAGCATTTGCTGATCCCGATGGTGATGGGCTGGTTAAAGAGGTCTGGTTTCCAAATCGTT TGCTACCAATGAAAGCAGATATTTTTAGTCGGGTTGCCTGGCAATTGCGTACCCGCTCAGGTGTAAACATCTATGCGTGG ATGCCGGTATTAAGCTGGGATTTAGATCCCACATTAACGCGAGTAAAATACTTACCAACTGGGGAGAAAAAAGCACAAAT TCATCCTGAACAATACCGCCGTCTCTCTCCTTTCGATGACAGGGTCAGAGCACAAGTTGGCATGTTATATGATGATCTTG CCGGACATGCTGCTTTTGATGGCATATTGTTCCACGATGATGCTTTGCTTTCAGATTATGAAGATGCCAGTGCACCGGCT ATCGCGGCTTATCAGCAAGCTGGCTTTAGCGGGAGTCTGAGCGAAATTCGACAAAACCCGGAGCAATTTAAACAGTGGAC CCGCTTTAAAAGTCGTGCGTTAACTGACTTCACTTTAGAACTTAGTGCGCGCGTAAAAGCCATTCGTGGTCCACATGTTA AAACTGCACGAAATATTTTTGCACTTCCGGTAATACAACCTGAAAGTGAAGCCTGGTTTGCACAGAATTATGCTGATTTC CTAAAAAGCTATGACTGGACCGCTATTATGGCTATGCCTTATATGGAAGGCGTCACAGAAAAATTGGCTGATCAATGGTT AACACAATTGACCAATCAGATGAAAAGCATCCCGCAGGCTAAAGACAAATCAATTTTAGAATTACAGGCACAAAACTGGC AGAAAAATAGTCAGCATCAGGCTATTTCTTCACAACAACTCGCTCACTGGATGAGCCTATTACAACTGAATGGAGTGAAA AATTATGGTTATTATCCCGACAATTTTCTGCATAACCAACCTGAAATAGACGTTATTCGTCCTGAGTTTTCAACAGCCTG GTATCCGAAAAATGATTAA
Upstream 100 bases:
>100_bases CTGGCGCAACGCTACGCTGGGAAAAACGACCTTATGACGGTGACAGAGAACACAACTTATACGTTGAATTCGATATGACA TTCAGATTTTAAGGATAAAT
Downstream 100 bases:
>100_bases TCGCATCGTATCGTTTTTTATATTATGTCTGGTGTTATGCATCCCCCTATGCGTAGCGTACTTTCACTCTGGTGAACTGA TGATGAGGTTCGTTTTCTTC
Product: outer membrane N-deacetylase
Products: NA
Alternate protein names: PGA N-deacetylase; Poly-beta-1,6-GlcNAc N-deacetylase [H]
Number of amino acids: Translated: 672; Mature: 672
Protein sequence:
>672_residues MLRNGNKYILMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDEAADQRFMSVRTSALREQFAW LRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPVGSWVDTPADEQVKFGDEMVD REYFATWQQVREVARSRLVEVASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTK AEVNPHVFVWPYGEANGIAIAELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKPLQRVMHID LDYIYDENRQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAW MPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYRRLSPFDDRVRAQVGMLYDDLAGHAAFDGILFHDDALLSDYEDASAPA IAAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFTLELSARVKAIRGPHVKTARNIFALPVIQPESEAWFAQNYADF LKSYDWTAIMAMPYMEGVTEKLADQWLTQLTNQMKSIPQAKDKSILELQAQNWQKNSQHQAISSQQLAHWMSLLQLNGVK NYGYYPDNFLHNQPEIDVIRPEFSTAWYPKND
Sequences:
>Translated_672_residues MLRNGNKYILMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDEAADQRFMSVRTSALREQFAW LRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPVGSWVDTPADEQVKFGDEMVD REYFATWQQVREVARSRLVEVASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTK AEVNPHVFVWPYGEANGIAIAELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKPLQRVMHID LDYIYDENRQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAW MPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYRRLSPFDDRVRAQVGMLYDDLAGHAAFDGILFHDDALLSDYEDASAPA IAAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFTLELSARVKAIRGPHVKTARNIFALPVIQPESEAWFAQNYADF LKSYDWTAIMAMPYMEGVTEKLADQWLTQLTNQMKSIPQAKDKSILELQAQNWQKNSQHQAISSQQLAHWMSLLQLNGVK NYGYYPDNFLHNQPEIDVIRPEFSTAWYPKND >Mature_672_residues MLRNGNKYILMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDEAADQRFMSVRTSALREQFAW LRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPVGSWVDTPADEQVKFGDEMVD REYFATWQQVREVARSRLVEVASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTK AEVNPHVFVWPYGEANGIAIAELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKPLQRVMHID LDYIYDENRQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAW MPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYRRLSPFDDRVRAQVGMLYDDLAGHAAFDGILFHDDALLSDYEDASAPA IAAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFTLELSARVKAIRGPHVKTARNIFALPVIQPESEAWFAQNYADF LKSYDWTAIMAMPYMEGVTEKLADQWLTQLTNQMKSIPQAKDKSILELQAQNWQKNSQHQAISSQQLAHWMSLLQLNGVK NYGYYPDNFLHNQPEIDVIRPEFSTAWYPKND
Specific function: Catalyzes the N-deacetylation of poly-beta-1,6-N-acetyl- D-glucosamine (PGA), a biofilm adhesin polysaccharide. N- deacetylation promotes PGA export through the PgaA porin [H]
COG id: COG0726
COG function: function code G; Predicted xylanase/chitin deacetylase
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor; Periplasmic side [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide deacetylase family [H]
Homologues:
Organism=Escherichia coli, GI1787260, Length=672, Percent_Identity=96.4285714285714, Blast_Score=1352, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011330 - InterPro: IPR002509 [H]
Pfam domain/function: PF01522 Polysacc_deac_1 [H]
EC number: NA
Molecular weight: Translated: 77462; Mature: 77462
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRNGNKYILMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDE CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCHH AADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSF HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHH YTRVFPILQAFQWPAVWAPVGSWVDTPADEQVKFGDEMVDREYFATWQQVREVARSRLVE HHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH VASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTK HHHHCCCCCCCEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AEVNPHVFVWPYGEANGIAIAELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKE HCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEEHHCCCCHHHHHCCCEEEEECCCCHHH FAQQIITVQEKPLQRVMHIDLDYIYDENRQQMDRNIDVLIQRVKDMQISTVYLQAFADPD HHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHCCHHHHHHHHHCCHHEEEEEEEECCCC GDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPT CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHEEECCC GEKKAQIHPEQYRRLSPFDDRVRAQVGMLYDDLAGHAAFDGILFHDDALLSDYEDASAPA CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHCCEEEECCHHHCCCCCCCCCH IAAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFTLELSARVKAIRGPHVKTARNIF HHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCHHEEEEHHHHHHHHCCCCCHHHCCEE ALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYMEGVTEKLADQWLTQLTNQMKSIPQA EEEEECCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KDKSILELQAQNWQKNSQHQAISSQQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDVIR CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEC PEFSTAWYPKND CCCCCCCCCCCC >Mature Secondary Structure MLRNGNKYILMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDE CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCHH AADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSF HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHH YTRVFPILQAFQWPAVWAPVGSWVDTPADEQVKFGDEMVDREYFATWQQVREVARSRLVE HHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH VASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTK HHHHCCCCCCCEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AEVNPHVFVWPYGEANGIAIAELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKE HCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEEHHCCCCHHHHHCCCEEEEECCCCHHH FAQQIITVQEKPLQRVMHIDLDYIYDENRQQMDRNIDVLIQRVKDMQISTVYLQAFADPD HHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHCCHHHHHHHHHCCHHEEEEEEEECCCC GDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPT CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHEEECCC GEKKAQIHPEQYRRLSPFDDRVRAQVGMLYDDLAGHAAFDGILFHDDALLSDYEDASAPA CCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHCCEEEECCHHHCCCCCCCCCH IAAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFTLELSARVKAIRGPHVKTARNIF HHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCHHEEEEHHHHHHHHCCCCCHHHCCEE ALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYMEGVTEKLADQWLTQLTNQMKSIPQA EEEEECCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KDKSILELQAQNWQKNSQHQAISSQQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDVIR CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEC PEFSTAWYPKND CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]