Click here to switch to the map view.

The map label for this gene is ydeE

Identifier: 218700187

GI number: 218700187

Start: 1917685

End: 1918872

Strand: Direct

Name: ydeE

Synonym: ECIAI39_1836

Alternate gene names: 218700187

Gene position: 1917685-1918872 (Clockwise)

Preceding gene: 218700185

Following gene: 218700189

Centisome position: 37.37

GC content: 50.34

Gene sequence:

>1188_bases
ATGAACTTATCCCTACGACGCTCTACCAGCGCCCTTCTTGCCTCGTCGTTGTTATTAACCATCGGACGCGGCGCTACGCT
GCCGTTTATGACCATTTACTTGAGTCGCCAGTACAGCCTGAGTGTCGATCTAATCGGTTATGCGATGACAATTGCGCTCA
CTATTGGCGTCGTTTTTAGCCTCGGTTTTGGTATCCTGGCGGATAAGTTCGACAAGAAACGCTATATGTTACTGGCAATT
ACCGCCTTCGCCAGCGGTTTTATTGCCATTCCTTTAGTGAATAACGTGACGCTGGTGGTGCTCTTTTTTGCCCTTATTAA
CTGCGCCTATTCCGTCTTTGCTACCGTGTTGAAAGCCTGGTTTGCCGACAATCTTTCGTCCACCAGCAAAACGAAAATCT
TCTCAATCAACTACACCATGCTCAACATTGGCTGGACCATCGGTCCGCCGCTAGGCACGCTGTTGGTGATGCAGAGCATC
AATCTGCCCTTCTGGCTGGCAGCTATCTGTTCCGCGTTCCCCATGCTTTTCATTCAAATTTGGGTAAAGCGCAGCGAGAA
AATCATCGCTACGGAAACAGGCAGTGTCTGGTCGCCGAAAGTTTTATTACAAGATAAAGCACTGTTGTGGTTTACCTGCT
CTGGCTTTCTGGCTTCTTTTGTTAGCGGCGCATTTGCTTCATGCATTTCACAATATGTGATGGTGATTGCTGATGGTGAT
TTTGCCGAAAAGGTGGTCGCGGTTGTTCTTCCGGTGAATGCTGCCATGGTGGTTACGTTGCAATATTCCGTGGGCCGCCG
CCTTAACCCGGCTAACATCCGCGCGCTGATGACAGCAGGCACCCTCTGTTTCGTCATCGGGCTGGTCGGTTTTATTTTTT
CCGGCAACAGCCTGCTAATGTGGGGTATGTCAGCTGCGGTATTTACTGTCGGTGAAATCATTTATGCGCCGGGCGAGTAT
ATGTTGATTGACCATATTGCGCCGCCAGGAATGAAAGCCAGCTATTTTTCCGCCCAGTCACTGGGCTGGCTTGGCGCAGC
AGTTAATCCATTAGTCAGCGGAGTGGTGCTCACGAACATGCCCCCTTCCACGTTGTTTATCATCCTGGCGATGGTAATCA
TTGCCGCGTGGGTGTTAATGCTGAAAGGCATTCGTGCAAAATCCTGGGGGCCGCCTGTGGCATGTTGA

Upstream 100 bases:

>100_bases
CATTAATGCGCAAATAAGTCGCTATACTTCGGATTTTTGCCATGCTATTTCTTTACATCTCTAAAACAAAACATAACGAA
ACGCACTGCCGGACAGACAA

Downstream 100 bases:

>100_bases
TGGGCGTGCCTCACTGCCACGACTTTACTCATTATTTTCCTGTTACAAAGGCGTAGCCTTCATCTTCCCAGCCGGTGATC
CCGCCGAGCATGATTTTAAC

Product: putative MFS-type transporter YdeE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MNLSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI
TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAWFADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSI
NLPFWLAAICSAFPMLFIQIWVKRSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGD
FAEKVVAVVLPVNAAMVVTLQYSVGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNSLLMWGMSAAVFTVGEIIYAPGEY
MLIDHIAPPGMKASYFSAQSLGWLGAAVNPLVSGVVLTNMPPSTLFIILAMVIIAAWVLMLKGIRAKSWGPPVAC

Sequences:

>Translated_395_residues
MNLSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI
TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAWFADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSI
NLPFWLAAICSAFPMLFIQIWVKRSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGD
FAEKVVAVVLPVNAAMVVTLQYSVGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNSLLMWGMSAAVFTVGEIIYAPGEY
MLIDHIAPPGMKASYFSAQSLGWLGAAVNPLVSGVVLTNMPPSTLFIILAMVIIAAWVLMLKGIRAKSWGPPVAC
>Mature_395_residues
MNLSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI
TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAWFADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSI
NLPFWLAAICSAFPMLFIQIWVKRSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGD
FAEKVVAVVLPVNAAMVVTLQYSVGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNSLLMWGMSAAVFTVGEIIYAPGEY
MLIDHIAPPGMKASYFSAQSLGWLGAAVNPLVSGVVLTNMPPSTLFIILAMVIIAAWVLMLKGIRAKSWGPPVAC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787815, Length=395, Percent_Identity=96.4556962025317, Blast_Score=735, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42595; Mature: 42595

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFS
CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHH
LGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAW
HHHHHHHHHHCCCEEEEEEEEHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
FADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQI
HHCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
WVKRSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGD
HHHCCCEEEEECCCCCCCCEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHEEEEECCC
FAEKVVAVVLPVNAAMVVTLQYSVGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNSLLM
HHHHHHHHEEECCCEEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
WGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGWLGAAVNPLVSGVVLTNM
ECHHHHHHHHHHHEECCCCEEEEECCCCCCCCCHHHCHHCCHHHHHHHHHHHCCEEEECC
PPSTLFIILAMVIIAAWVLMLKGIRAKSWGPPVAC
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNLSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFS
CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHHHH
LGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAW
HHHHHHHHHHCCCEEEEEEEEHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
FADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQI
HHCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
WVKRSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGD
HHHCCCEEEEECCCCCCCCEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHEEEEECCC
FAEKVVAVVLPVNAAMVVTLQYSVGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNSLLM
HHHHHHHHEEECCCEEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
WGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGWLGAAVNPLVSGVVLTNM
ECHHHHHHHHHHHEECCCCEEEEECCCCCCCCCHHHCHHCCHHHHHHHHHHHCCEEEECC
PPSTLFIILAMVIIAAWVLMLKGIRAKSWGPPVAC
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8383113; 9097039; 9278503 [H]