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The map label for this gene is yidP [H]

Identifier: 218700185

GI number: 218700185

Start: 1915848

End: 1916546

Strand: Direct

Name: yidP [H]

Synonym: ECIAI39_1834

Alternate gene names: 218700185

Gene position: 1915848-1916546 (Clockwise)

Preceding gene: 218700179

Following gene: 218700187

Centisome position: 37.33

GC content: 41.2

Gene sequence:

>699_bases
GTGATTTTTCAAAAGATTGCCCGCTTACTTAAATCCGAGATCAATGGCTATTCATGGCATGTTGGTGATTTGTTGCCGTC
AGAAGCTGAACTCGCTGTTCGTTATAATGTTTCGCGTAATACCCTGCGTAAGGCATTATCCTTGCTGGAAGGCGAAGGAA
TTATTCATAGAAAGCATGGTTCAGGAACATACATTCAAAAAAAGAATTTTGTTGCACACATTGATCACATGAACAGCTTC
AGTGAAATTGCGCATAAAAGCGGCAAGGAGGCAGGAAGTCAGATTATGAAATTTGAAGTGCAGGATGCTTCTCCCCCTAT
TGCGACTGAGCTGAATTTAGTGACTGGTGAGCAGGTTTATTACATAAAGAGACTGCGATTCATTGAGGATAATGCAGCAC
AATTAGAAGAAACGTGGATTTCAGTGGCACGTTTTCCTGATTTAACCGTAGCACATATGCAAAAATCCAAATTTTCGTAT
ATTGAGAACGAATGCGGGATCAAAATCATTGGCACCTTTGAAACTTTCTCCCCTACTTTTCCTACCCCAGAAATCGCCAG
TATTTTACGGATCAGCCCACGGGATCCCATACTTAAAATTCAGACCCAGGCTGTGGACAGTAACTCTATTCCGCTGGATT
ATTCGTTACTTTACAGCAATATTTTCGAGTTCCAGGTAAAGTACTTTTTCCCGCGATAA

Upstream 100 bases:

>100_bases
AAGTTGTTCAACATCAGGGTGATAATTAAACGACTCGGCCATAGGATAAACCAATCAGGACTCAACTCCTTGTTTTCAAT
GGCTCTTAAAAGGTGCAAAA

Downstream 100 bases:

>100_bases
AAGCAGACGCACAGAGTGCTGACATCACATTCTGTGCGTATGGTTTAGCCTCTAACCTTTACCGCCTTACGCCACCGCAA
GCCAAATACATTGATATACA

Product: putative DNA-binding transcriptional regulator HTH family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MIFQKIARLLKSEINGYSWHVGDLLPSEAELAVRYNVSRNTLRKALSLLEGEGIIHRKHGSGTYIQKKNFVAHIDHMNSF
SEIAHKSGKEAGSQIMKFEVQDASPPIATELNLVTGEQVYYIKRLRFIEDNAAQLEETWISVARFPDLTVAHMQKSKFSY
IENECGIKIIGTFETFSPTFPTPEIASILRISPRDPILKIQTQAVDSNSIPLDYSLLYSNIFEFQVKYFFPR

Sequences:

>Translated_232_residues
MIFQKIARLLKSEINGYSWHVGDLLPSEAELAVRYNVSRNTLRKALSLLEGEGIIHRKHGSGTYIQKKNFVAHIDHMNSF
SEIAHKSGKEAGSQIMKFEVQDASPPIATELNLVTGEQVYYIKRLRFIEDNAAQLEETWISVARFPDLTVAHMQKSKFSY
IENECGIKIIGTFETFSPTFPTPEIASILRISPRDPILKIQTQAVDSNSIPLDYSLLYSNIFEFQVKYFFPR
>Mature_232_residues
MIFQKIARLLKSEINGYSWHVGDLLPSEAELAVRYNVSRNTLRKALSLLEGEGIIHRKHGSGTYIQKKNFVAHIDHMNSF
SEIAHKSGKEAGSQIMKFEVQDASPPIATELNLVTGEQVYYIKRLRFIEDNAAQLEETWISVARFPDLTVAHMQKSKFSY
IENECGIKIIGTFETFSPTFPTPEIASILRISPRDPILKIQTQAVDSNSIPLDYSLLYSNIFEFQVKYFFPR

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=232, Percent_Identity=35.3448275862069, Blast_Score=174, Evalue=3e-45,
Organism=Escherichia coli, GI1786950, Length=198, Percent_Identity=32.3232323232323, Blast_Score=113, Evalue=9e-27,
Organism=Escherichia coli, GI87082252, Length=223, Percent_Identity=24.2152466367713, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788418, Length=225, Percent_Identity=26.6666666666667, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790540, Length=234, Percent_Identity=26.4957264957265, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26475; Mature: 26475

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFQKIARLLKSEINGYSWHVGDLLPSEAELAVRYNVSRNTLRKALSLLEGEGIIHRKHG
CHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCEEEEECC
SGTYIQKKNFVAHIDHMNSFSEIAHKSGKEAGSQIMKFEVQDASPPIATELNLVTGEQVY
CCCEEECCCCEEEHHHHHHHHHHHHHCCHHHHHHEEEEEECCCCCCCEEEEEEECCCHHH
YIKRLRFIEDNAAQLEETWISVARFPDLTVAHMQKSKFSYIENECGIKIIGTFETFSPTF
HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
PTPEIASILRISPRDPILKIQTQAVDSNSIPLDYSLLYSNIFEFQVKYFFPR
CCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHEEEEEECCC
>Mature Secondary Structure
MIFQKIARLLKSEINGYSWHVGDLLPSEAELAVRYNVSRNTLRKALSLLEGEGIIHRKHG
CHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCEEEEECC
SGTYIQKKNFVAHIDHMNSFSEIAHKSGKEAGSQIMKFEVQDASPPIATELNLVTGEQVY
CCCEEECCCCEEEHHHHHHHHHHHHHCCHHHHHHEEEEEECCCCCCCEEEEEEECCCHHH
YIKRLRFIEDNAAQLEETWISVARFPDLTVAHMQKSKFSYIENECGIKIIGTFETFSPTF
HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
PTPEIASILRISPRDPILKIQTQAVDSNSIPLDYSLLYSNIFEFQVKYFFPR
CCHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]