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The map label for this gene is yraJ

Identifier: 218696851

GI number: 218696851

Start: 3646085

End: 3648601

Strand: Direct

Name: yraJ

Synonym: EC55989_3564

Alternate gene names: 218696851

Gene position: 3646085-3648601 (Clockwise)

Preceding gene: 218696850

Following gene: 218696852

Centisome position: 70.73

GC content: 47.68

Gene sequence:

>2517_bases
ATGCCACAACGACACCACCAGGGACATAAACGCACACCGAAACAGTTGGCGCTCATCATCAAACGCTGTTTGCCGATGGT
GCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACTACAA
AAAGTGGTATGCAAACAACTGATCTGTCACGTTTTTCAAAAAAATACGCACAACTACCAGGAACTTATCAGGTTGATATC
TGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTAC
GGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCA
ACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCGACTTAATTTGAGCATTCCCCAA
ATTGCACTGTACCGTGATGCAAGAGGTTACGTCTCCCCTTCTCGTTGGGACGATGGTATACCAACGCTGTTTACCAACTA
CTCGTTTACAGGTTCTGATAACCGTTACCGCCAGGGCAATCGTAGCCAACGACAGTACCTGAATATGCAAAATGGTGCTA
ATTTTGGCCCCTGGCGATTACGCAACTATTCCACATGGACACGCAACGATCAGGCGTCAAGCTGGAACACTATCAGTAGT
TATTTACAACGTGATATCAAGGCGTTGAAGTCTCAGTTGCTTCTGGGAGAAAGCGCCACCAGCGGCAGTATTTTTTCCAG
CTACACCTTTACTGGCGTGCAACTCGCTTCCGACGATAATATGTTGCCAAACAGCCAGCGCGGATTTGCCCCAACGGTAC
GCGGTATCGCAAACAGTAGTGCAATCGTGACTATCAGGCAAAATGGTTATGTGATCTATCAAAGCAACGTGCCAGCGGGT
GCCTTTGAAATTAACGATCTCTACCCCTCTTCCAACAGCGGCGATTTAGAAGTCACGATTGAAGAAAGTGACGGTACGCA
ACGTCGCTTTATCCAGCCTTATTCTTCATTACCCATGATGCAGCGACCTGGGCATCTAAAATATAGCGCGACCGCTGGAC
GCTATCGCGCTGATGCAAACAGTGATAGCAAGGAACCCGAATTTGCTGAAGCCACGGCAATATATGGTTTGAATAATACT
TTTACGCTGTATGGCGGCCTGCTCGGTTCTGAAGATTATTATGCGCTGGGGATCGGTATCGGCGGCACACTTGGCGCACT
GGGCGCGTTGTCGATGGATATCAACAGAGCTGACACCCAATTCGATAACCAGCACTCTTTTCATGGCTATCAATGGCGTA
CGCAGTACATCAAAGATATCCCGGAAACCAACACCAATATCGCTGTCAGCTACTATCGCTATACCAACGATGGCTATTTT
AGTTTTAATGAAGCCAATACCCGTAATTGGAACTATAACAGTCGCCAAAAAAGTGAAATTCAATTCAACATCAGCCAGAC
AATATTTGATGGGGTAAGTCTGTATGCCTCCGGTTCGCAGCAAGACTATTGGGGCAATAACGATAAAAACAGGAATATCT
CAGTTGGGGTTTCCGGTCAGCAATGGGGAATTGGTTACAGCCTGAATTATCAATACAGTCGCTACACGGATCAAAATAAT
GACCGCGCACTCTCTTTGAATCTCAGTATTCCGTTAGAACGCTGGTTACCGCGTAGCCGGGTTTCCTATCAGATGACCAG
CCAGAAAGATCGCCCAACCCAACATGAAATGCGTCTTGATGGCTCACTGCTGGATGATGGTCGCCTGAGCTATAGCCTGG
AACAAAGTCTGGATGACGATAACAACCATAACAGTAGCCTGAACGCCAGTTACCGTTCACCTTATGGCACCTTCAGTGCC
GGATACAGCTACGGTAATGACAGCAGCCAATACAATTACGGCGTTACCGGCGGCGTGGTTATCCATCCTCATGGCGTGAC
GCTCTCGCAATATCTGGGCAACGCTTTTGCGCTTATCGATGCTAATGGGGCTTCTGGCGTGAGGATACAAAACTATCCGG
GGATTGCTACTGATCCCTTTGGCTATGCAGTGGTTCCTTATCTCACGACTTACCAGGAAAACCGTCTCTCGGTAGATACT
ACGCAACTGCCCGATAACGTCGATCTTGAGCAAACAACACAGTTTGTGGTGCCCAACAGAGGTGCAATGGTAGCGGCGCG
TTTCAACGCCAATATCGGTTATCGCGTACTTGTTACAGTCAGCGATCGCAACGGTAAACCGTTGCCCTTTGGCGCTCTTG
CCAGCAACGATGAGACGGGGCAACAAAGTATCGTCGATGAGGGCGGCATACTATATCTCTCTGGGATATCGAGTAAATCA
CAAAGCTGGACTGTACGCTGGGGAAATCAGGCAGATCAACAATGTCAGTTTGCTTTTAGTACACCGGATTCAGAACCAAC
AACCTCTGTATTACAAGGCACGGCGCAGTGCCATTAA

Upstream 100 bases:

>100_bases
AGAACGTGAAATGGGCTGCAATCAATGATTATGGCGGCAGTTCCGGGACAGAAACTCGTCCACTGCAATAACAAATATAA
AAAACACAGGTCATCAGGGA

Downstream 100 bases:

>100_bases
GGATAAAAAAATGAAAAGAGCGCCTCTTATAACAGGACTTTTGTTGATATCCACATCCTGCGCTTATGCCTCCTCAGGAG
GGTGTGGAGCCGACAGCACT

Product: putative outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 838; Mature: 837

Protein sequence:

>838_residues
MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDI
WLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQ
IALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQASSWNTISS
YLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAG
AFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNT
FTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYF
SFNEANTRNWNYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGIGYSLNYQYSRYTDQNN
DRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSA
GYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDT
TQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKS
QSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH

Sequences:

>Translated_838_residues
MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDI
WLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQ
IALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQASSWNTISS
YLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAG
AFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNT
FTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYF
SFNEANTRNWNYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGIGYSLNYQYSRYTDQNN
DRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSA
GYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDT
TQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKS
QSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
>Mature_837_residues
PQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIW
LNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQI
ALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQASSWNTISSY
LQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGA
FEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTF
TLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFS
FNEANTRNWNYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGIGYSLNYQYSRYTDQNND
RALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAG
YSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTT
QLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKSQ
SWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH

Specific function: Could be involved in the export and assembly of the putative yraH fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789533, Length=838, Percent_Identity=99.2840095465394, Blast_Score=1719, Evalue=0.0,
Organism=Escherichia coli, GI1787172, Length=870, Percent_Identity=38.6206896551724, Blast_Score=565, Evalue=1e-162,
Organism=Escherichia coli, GI1790772, Length=880, Percent_Identity=37.1590909090909, Blast_Score=562, Evalue=1e-161,
Organism=Escherichia coli, GI1786744, Length=858, Percent_Identity=37.4125874125874, Blast_Score=551, Evalue=1e-158,
Organism=Escherichia coli, GI1786332, Length=857, Percent_Identity=32.0886814469078, Blast_Score=386, Evalue=1e-108,
Organism=Escherichia coli, GI1788427, Length=791, Percent_Identity=27.6864728192162, Blast_Score=302, Evalue=5e-83,
Organism=Escherichia coli, GI87081778, Length=818, Percent_Identity=29.4621026894866, Blast_Score=278, Evalue=1e-75,
Organism=Escherichia coli, GI1789610, Length=806, Percent_Identity=27.5434243176179, Blast_Score=187, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 93652; Mature: 93521

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTT
CCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEEECCCCCEEECCEEEEECCCCCCHH
DLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDE
HHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECHHHHHCCCHHHHHHHHHCCEEEC
IPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGI
CCCCCCCCCHHHHHHHHHHCCCCCEECCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCC
PTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQASSWNTISS
CEEEECEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHH
YLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSS
HHHHHHHHHHHHHEECCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCC
AIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMM
EEEEEECCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCCCHHHHHCCHHCCCCC
QRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGI
CCCCCEEEECCCCCEECCCCCCCCCCCCHHEEEEEECCCEEEEEECEECCCCEEEEEECC
GGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYF
CCHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCEE
SFNEANTRNWNYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQ
EECCCCCCCCCCCCCCCCEEEEEEHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEEECCC
QWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLD
CCCCEEEEECEEHCCCCCCCCEEEEEEEECCHHHCCCCCCCEEEECCCCCCCCHHHEEEC
GSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVV
CCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEE
IHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDT
EECCCCCHHHHHCCEEEEEECCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEC
TQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETG
CCCCCCCCHHHCCEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
QQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
CHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCHHHHHCCCCCC
>Mature Secondary Structure 
PQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTT
CCCCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEEECCCCCEEECCEEEEECCCCCCHH
DLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDE
HHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECHHHHHCCCHHHHHHHHHCCEEEC
IPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGI
CCCCCCCCCHHHHHHHHHHCCCCCEECCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCC
PTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQASSWNTISS
CEEEECEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHH
YLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSS
HHHHHHHHHHHHHEECCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHCCCCC
AIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMM
EEEEEECCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEECCCCCHHHHHCCHHCCCCC
QRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYGGLLGSEDYYALGIGI
CCCCCEEEECCCCCEECCCCCCCCCCCCHHEEEEEECCCEEEEEECEECCCCEEEEEECC
GGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYF
CCHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCEE
SFNEANTRNWNYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQ
EECCCCCCCCCCCCCCCCEEEEEEHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEEECCC
QWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLD
CCCCEEEEECEEHCCCCCCCCEEEEEEEECCHHHCCCCCCCEEEECCCCCCCCHHHEEEC
GSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVV
CCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEE
IHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDT
EECCCCCHHHHHCCEEEEEECCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEC
TQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETG
CCCCCCCCHHHCCEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
QQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
CHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]