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The map label for this gene is yraI

Identifier: 218696850

GI number: 218696850

Start: 3645360

End: 3646055

Strand: Direct

Name: yraI

Synonym: EC55989_3563

Alternate gene names: 218696850

Gene position: 3645360-3646055 (Clockwise)

Preceding gene: 218696849

Following gene: 218696851

Centisome position: 70.72

GC content: 44.54

Gene sequence:

>696_bases
ATGTCAAAACGAACATTCGCGGTGATAATAACCTTGTTGTGTAGCTTCTGTATCGGCCAGGCGCTTGCAGGGGGTATCGT
TTTACAGCGAACGCGAGTGATCTATGATGCCAGCCGCAAAGAGGCTGCGTTACCTGTCGCAAACAAAGGCGCAGAAACGC
CTTATTTACTGCAATCATGGGTAGATAATATAGATGGTACAAGCCGTGCCCCATTTATTATAACCCCACCGCTATTTCGT
CTTGAAGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTA
CATTAATGTTCGTGCCATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACAC
GGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGACATCACTGGAATTTAAACGTAGT
GACCATTCACTCAATATATATAACCCAACTGAATATTACGTCGTATTTGCCGGACTGGCAGTCGATAAAACCGATCTCAC
AAGCAAAATTGAATATATCGCGCCCGGAGAACATAAACAGTTACCACTTCCTGCATCTGGCGGAAAGAACGTGAAATGGG
CTGCAATCAATGATTATGGCGGCAGTTCCGGGACAGAAACTCGTCCACTGCAATAA

Upstream 100 bases:

>100_bases
GTAACGCTGGATTACCGTTAATACGTTACGGCATTATCTGACCTTTCAGATAACGCCCTTTTCCTTCCTCTTTCTCGTTG
TATCAGGTTGAAAAATAACT

Downstream 100 bases:

>100_bases
CAAATATAAAAAACACAGGTCATCAGGGAATGCCACAACGACACCACCAGGGACATAAACGCACACCGAAACAGTTGGCG
CTCATCATCAAACGCTGTTT

Product: periplasmic pilin chaperone (lpfB-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSKRTFAVIITLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGTSRAPFIITPPLFR
LEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWTSLEFKRS
DHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ

Sequences:

>Translated_231_residues
MSKRTFAVIITLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGTSRAPFIITPPLFR
LEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWTSLEFKRS
DHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
>Mature_230_residues
SKRTFAVIITLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGTSRAPFIITPPLFRL
EAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWTSLEFKRSD
HSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ

Specific function: Could be required for the biogenesis of the putative yraH fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1789532, Length=231, Percent_Identity=98.7012987012987, Blast_Score=472, Evalue=1e-135,
Organism=Escherichia coli, GI1790771, Length=217, Percent_Identity=39.1705069124424, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1786743, Length=220, Percent_Identity=35.4545454545455, Blast_Score=142, Evalue=1e-35,
Organism=Escherichia coli, GI1787171, Length=219, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1786333, Length=238, Percent_Identity=34.0336134453782, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1788428, Length=213, Percent_Identity=30.0469483568075, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1786936, Length=199, Percent_Identity=31.6582914572864, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI87082203, Length=224, Percent_Identity=29.0178571428571, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788677, Length=159, Percent_Identity=32.7044025157233, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI87081806, Length=234, Percent_Identity=28.6324786324786, Blast_Score=87, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25623; Mature: 25491

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRTFAVIITLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSW
CCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
VDNIDGTSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSD
HHCCCCCCCCCEEECCCCEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCC
DVNANELTLVFKTRIKMFYRPAHLKGRVNDAWTSLEFKRSDHSLNIYNPTEYYVVFAGLA
CCCCCEEEEEEEEEEHHEECCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEEEECE
VDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
ECCCHHHHEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SKRTFAVIITLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSW
CCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
VDNIDGTSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSD
HHCCCCCCCCCEEECCCCEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCC
DVNANELTLVFKTRIKMFYRPAHLKGRVNDAWTSLEFKRSDHSLNIYNPTEYYVVFAGLA
CCCCCEEEEEEEEEEHHEECCCCCCCCCCCCEEEEEEECCCCEEEEECCCEEEEEEEECE
VDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
ECCCHHHHEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]