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The map label for this gene is yfeD

Identifier: 218696038

GI number: 218696038

Start: 2749842

End: 2750234

Strand: Direct

Name: yfeD

Synonym: EC55989_2692

Alternate gene names: 218696038

Gene position: 2749842-2750234 (Clockwise)

Preceding gene: 218696037

Following gene: 218696043

Centisome position: 53.34

GC content: 46.31

Gene sequence:

>393_bases
ATGAAAAGATTACGCAACAAAATGACCACCGAAGAACTGGCTGAATGCCTCGGTGTGGCTAAACAAACTGTTAACCGTTG
GATCAGAGAAAAAGGCTGGAAAACGGAAAAATTTCCCGGCGTGAAAGGCGGTCGTGCCAGACTTATTCTGGTCGATACGC
AAGTTTGCGAGTTTATTCAGAACACGCCAGCCTTCCATAACACACCAATGTTGATGGAAGCTGAAGAGAGAATTGCTGAA
TACGCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAA
AGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAA

Upstream 100 bases:

>100_bases
GAGATGACGCCAGTTGAACAAAAACAGTTTACATCCTTGCTTCTGCGGGAAGGGATTATCGGATTGTTACAACGCTTAGG
GATTCGCGATAGCAAATAAT

Downstream 100 bases:

>100_bases
ATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAA
AATCCAGCGCTTTGTTGATA

Product: putative nucleic acid-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAE
YAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDESA

Sequences:

>Translated_130_residues
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAE
YAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDESA
>Mature_130_residues
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAE
YAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDESA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI226510963, Length=130, Percent_Identity=100, Blast_Score=270, Evalue=3e-74,
Organism=Escherichia coli, GI87082097, Length=123, Percent_Identity=39.0243902439024, Blast_Score=84, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YFED_ECOLI (P27238)

Other databases:

- EMBL:   M13687
- EMBL:   X63976
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   S11409
- RefSeq:   AP_002996.1
- RefSeq:   NP_416898.3
- ProteinModelPortal:   P27238
- SMR:   P27238
- DIP:   DIP-12013N
- STRING:   P27238
- EnsemblBacteria:   EBESCT00000004726
- EnsemblBacteria:   EBESCT00000016902
- GeneID:   946865
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW2394
- KEGG:   eco:b2399
- EchoBASE:   EB1402
- EcoGene:   EG11432
- eggNOG:   NOG12354
- GeneTree:   EBGT00050000010071
- HOGENOM:   HBG511116
- ProtClustDB:   CLSK2502565
- BioCyc:   EcoCyc:EG11432-MONOMER
- Genevestigator:   P27238
- InterPro:   IPR009061
- InterPro:   IPR010749
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- ProDom:   PD060594

Pfam domain/function: PF07037 DUF1323; SSF46955 Putativ_DNA_bind

EC number: NA

Molecular weight: Translated: 14910; Mature: 14910

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECHHHHHHHH
NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LARLDIDESA
HHHHCCCCCC
>Mature Secondary Structure
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQ
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECHHHHHHHH
NTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNF
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LARLDIDESA
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2201776; 9205837; 9278503