| Definition | Escherichia coli 55989, complete genome. |
|---|---|
| Accession | NC_011748 |
| Length | 5,154,862 |
Click here to switch to the map view.
The map label for this gene is O
Identifier: 218695493
GI number: 218695493
Start: 2155609
End: 2156478
Strand: Direct
Name: O
Synonym: EC55989_2106
Alternate gene names: NA
Gene position: 2155609-2156478 (Clockwise)
Preceding gene: 218695489
Following gene: 218695494
Centisome position: 41.82
GC content: 55.52
Gene sequence:
>870_bases ATGACTGAAGAACCAGTCAGAGGGGCAAAAACTATGGCTAATGAAAAAAAGACATCCCGCAAAAAGTTTCGCGTGGCTGT CTCCGGATCAACTGTTGATGGCCGCGAAATCAGCCAGGTACATCTGCGTGAAGCCGCCGAGAACTTCAACCCGGATGTTT ACGCTGCCCGCGTGAACGTTGAGCACTATCTCTCGCCATGCCCGTCAAGCGAATTTTCCGCAATGGGCGATGTCACCGCG CTGAGTACGGAAGATATTACGGAAGGCCCGCTGGCCGGACGTACTGCGCTGTATGCAGAAATCGAACCGACCGAGCGCAT GAAGCAGCTTGTCGCTGACGGCAAGAAAATCTATTCCAGTATCGAACTGCACCCGCAGTTCTCCGTTAACGGGCGCGCCT ATCTGGTCGGGCTGGCGATGACCGACACCCCGGCAAGCCTGGGCACTGAGCGCCTGAAATTCACGGCACAGCAACGTCAG GCGGTGATGACGTTCAACAGTATCCAGGGTGAAGCACCGCTTATCTCCGAAGCCATCGAGTCTGAAATCATCGAAATGGC AGAACAACGCCAGGAAGAAGGCACCCAGTGGTTTAACCGCGTAATGGGGATTATTGGTCGTGGCCGCAAAGCGGATGACG CCAGTTTTTCCCGAATTCAGGAAGCGGTGGAAGGCGTTGCAACGTCACAGGCCGACATTATCGACCGTTTTAATGTGCTG GAAACCCGCCATCAGCAGGACCGCCAGAAAATCACGTCACTGACCACAGAGCTGACAGCATTGAAGGAAAAACTGCGCAC GCAGGACGGCGATCCGCAGAACCGCTTCACCGCAACAGGCGCAGCCTCCGACCAGCTGGCTGACTTCTGA
Upstream 100 bases:
>100_bases GGAAGATTACCCGCGCGCGAAACCGTTCTCCTTAACCCCCTGTTCTGGCCGTTTTCTTACAACAAAAGCCCTTTGTATCA GCCTGTTACGCTTTGCCATC
Downstream 100 bases:
>100_bases TAAGACAAAGGAGCAAATTTTTTATGAATCTGGTGATGTCAGATATTACCCGCAACAAGCTGGGTTGCTATATGGCGCAG CAGGCGTCGCTTAACAATAT
Product: Capsid scaffolding protein O
Products: NA
Alternate protein names: Capsid Scaffolding; Capsid Scaffolding Protein; Phage Capsid Scaffolding; Capsid Scaffolding Protein O; Phage Capsid Scaffolding Protein GpO; Phage-Related Capsid Scaffolding Protein; V Protein Bacteriophage; Scaffold Protein; Presumed Capsid-Scaffolding Protein; Bacteriophage Protein; Bacteriophage P2 GPO Capsid Protein; Scaffold; Capsid Protein; Presumed Capsid Scaffolding Protein; Capsid Scafolding Protein; Phage-Related Capsid Scaffold Protein; Phage-Related Capsid Scaffold Bacteriophage Protein; Phage P2 Capsid Scaffolding GpO-Like Protein; Prophage Capsid Scaffolding Protein; Flagellar Biosynthesis/Type III Secretory Pathway Protein
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MTEEPVRGAKTMANEKKTSRKKFRVAVSGSTVDGREISQVHLREAAENFNPDVYAARVNVEHYLSPCPSSEFSAMGDVTA LSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVGLAMTDTPASLGTERLKFTAQQRQ AVMTFNSIQGEAPLISEAIESEIIEMAEQRQEEGTQWFNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDRFNVL ETRHQQDRQKITSLTTELTALKEKLRTQDGDPQNRFTATGAASDQLADF
Sequences:
>Translated_289_residues MTEEPVRGAKTMANEKKTSRKKFRVAVSGSTVDGREISQVHLREAAENFNPDVYAARVNVEHYLSPCPSSEFSAMGDVTA LSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVGLAMTDTPASLGTERLKFTAQQRQ AVMTFNSIQGEAPLISEAIESEIIEMAEQRQEEGTQWFNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDRFNVL ETRHQQDRQKITSLTTELTALKEKLRTQDGDPQNRFTATGAASDQLADF >Mature_288_residues TEEPVRGAKTMANEKKTSRKKFRVAVSGSTVDGREISQVHLREAAENFNPDVYAARVNVEHYLSPCPSSEFSAMGDVTAL STEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSSIELHPQFSVNGRAYLVGLAMTDTPASLGTERLKFTAQQRQA VMTFNSIQGEAPLISEAIESEIIEMAEQRQEEGTQWFNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDRFNVLE TRHQQDRQKITSLTTELTALKEKLRTQDGDPQNRFTATGAASDQLADF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31951; Mature: 31820
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEEPVRGAKTMANEKKTSRKKFRVAVSGSTVDGREISQVHLREAAENFNPDVYAARVNV CCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECH EHYLSPCPSSEFSAMGDVTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSS HHHHCCCCCCHHHHCCCEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH IELHPQFSVNGRAYLVGLAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGEAPLISEAIE HCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH SEIIEMAEQRQEEGTQWFNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDRFNVL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH ETRHQQDRQKITSLTTELTALKEKLRTQDGDPQNRFTATGAASDQLADF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHCCC >Mature Secondary Structure TEEPVRGAKTMANEKKTSRKKFRVAVSGSTVDGREISQVHLREAAENFNPDVYAARVNV CCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECH EHYLSPCPSSEFSAMGDVTALSTEDITEGPLAGRTALYAEIEPTERMKQLVADGKKIYSS HHHHCCCCCCHHHHCCCEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH IELHPQFSVNGRAYLVGLAMTDTPASLGTERLKFTAQQRQAVMTFNSIQGEAPLISEAIE HCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH SEIIEMAEQRQEEGTQWFNRVMGIIGRGRKADDASFSRIQEAVEGVATSQADIIDRFNVL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH ETRHQQDRQKITSLTTELTALKEKLRTQDGDPQNRFTATGAASDQLADF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA