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The map label for this gene is prfH

Identifier: 218693719

GI number: 218693719

Start: 287834

End: 288334

Strand: Direct

Name: prfH

Synonym: EC55989_0260

Alternate gene names: 218693719

Gene position: 287834-288334 (Clockwise)

Preceding gene: 218693718

Following gene: 218693721

Centisome position: 5.58

GC content: 53.69

Gene sequence:

>501_bases
GTGTTGGAAACAGAAACGGGCCGCTACTCTGACACGCTGCGTTCGGCGCTGATTTCTCTGGATGGCGATAACGCATGGGC
ATTAAGCGAAAGCTGGTGTGGCACTATTCAGTGGATTTGTCCGAGTCCGTATCGGCCTCATCATGGGCGCAAAAACTGGT
TTCTGGGCATTGGGCGTTTTACCGCTGATGAGCAGGAACAATCGGATGCAATCCGTTATGAGACGTTGCGTTCGTCGGGG
CCGGGCGGTCAACATGTCAATAAAACCGACTCGGCGGTACGCGCCACGCATTTGGCATCCGGTATTAGCGTGAAGGTTCA
GTCAGAGCGTAGTCAGCATGCTAACAAGCGGCTGGCACGATTGCTGATTGCCTGGAAGCTGGAGCAGCAGCAACAGGAAA
ATAGCGCGGTGCTGAAATCGCAGCGGCGAATGTTCCATCACCAGATTGAACGTGGCAACCCGAGACGGACATTTACAGGG
ATGGCTTTTATCGAAGGATAA

Upstream 100 bases:

>100_bases
ACTCTCCTCAGCGCAGGGGCCGGAAGAATGTTGTCTCGCAGTGAAAAAGGCGCTGGACAGGCTAATTAAAGAAGCTGCCC
GACAAGACGTCGCGGTAACG

Downstream 100 bases:

>100_bases
TGAAGGATGAAACTGCCGGAAGGCGATTAAACGCCATCCGGCAGCAAATCAAATAATTACTTCGCCGGAATTTCTTTCAG
CAGTTCAGTCAGCAGCGTCC

Product: peptide chain release factor-like protein

Products: NA

Alternate protein names: RF-H [H]

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MLETETGRYSDTLRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADEQEQSDAIRYETLRSSG
PGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTG
MAFIEG

Sequences:

>Translated_166_residues
MLETETGRYSDTLRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADEQEQSDAIRYETLRSSG
PGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTG
MAFIEG
>Mature_166_residues
MLETETGRYSDTLRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADEQEQSDAIRYETLRSSG
PGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTG
MAFIEG

Specific function: Could be involved in translational termination [H]

COG id: COG1186

COG function: function code J; Protein chain release factor B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic/mitochondrial release factor family [H]

Homologues:

Organism=Homo sapiens, GI34577120, Length=60, Percent_Identity=51.6666666666667, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787462, Length=94, Percent_Identity=45.7446808510638, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI2367172, Length=131, Percent_Identity=32.824427480916, Blast_Score=65, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321295, Length=57, Percent_Identity=57.8947368421053, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI19921226, Length=64, Percent_Identity=54.6875, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000352
- InterPro:   IPR017509 [H]

Pfam domain/function: PF00472 RF-1 [H]

EC number: NA

Molecular weight: Translated: 18876; Mature: 18876

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00745 RF_PROK_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETETGRYSDTLRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRF
CCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCEEEEECCC
TADEQEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLAR
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHHHH
LLIAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MLETETGRYSDTLRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRF
CCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCEEEEECCC
TADEQEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLAR
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHHHH
LLIAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1695895; 9278503; 1408743 [H]