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The map label for this gene is ydhB [H]

Identifier: 218692110

GI number: 218692110

Start: 4458328

End: 4459233

Strand: Reverse

Name: ydhB [H]

Synonym: ECED1_4519

Alternate gene names: 218692110

Gene position: 4459233-4458328 (Counterclockwise)

Preceding gene: 218692111

Following gene: 218692109

Centisome position: 85.6

GC content: 45.81

Gene sequence:

>906_bases
ATGTTCATCTCAGACGAAACGCTTCGTGTTATTCATCTGGTCGCCAGACACCAGAGCATTACCACCGCAGCCGAGCAGTT
AAATAAAGTCCCTTCCGCCATCAGTTACACTATCAAGAAAGCGGAAGAGAGCCTGGGCGTTGAACTGTTCATTCGTAAGG
GACGCTATATTGAATTATCGCCAGCGGGAAGTTACTTCATCGAACATAGCAAAACTATTCTTGGCGACCTGGAAGCATTA
AAGCGCAACACAGTGCTGATTCACGATGGTATTGAGCGTGAACTGACAATTGCGGTAAACAATATTATTCCTGGTGATTT
GCTGGTGGCATTTATTCGAGATTTTGAACGGCAATTCACATCAACAACACTGACGGTAGATCTTGAGGTATACAACGGCT
GCTGGGATGCGCTGTACAGTAAGCGTGCTGATCTGGTCTACGGTGCTCCTCATGCAGTACCAAGCAGTGAAAGCATCATT
AGCGAACCGGTCGGACAAATGGAATGGGATTTTGTCGTCAGCCCACTCCACCCACTGGCAGCGAAGCGGCATCCATTAGA
AAACAGTGAATTGCGTCATTATCCAGCGGTTTGTATCCGCGATACCTCCGTTAACTTCCCCCCGATGCAAGCCTGGTTGT
TGGAAGGACAAAAACCCATTTTTGTTCCTGACTTCGCTACGGCAATCGCCTTAATAGAACAAAACGTCGGTATTGGTTAT
ATTCCACATCATCTGGCATTGCCGTTATTGAACAGCGGTAAATTGCTTAAAAAGCCAATGCGCGAACATAAACACGCCAC
CAAGTTATTTCTTGCCGCTCGTTCCGATGGTATGGGCAAAGCCTGTCAGTGGTGCATAGAATATTTAAGAAACCCACAAT
TAATGACACAATTTGTATTTAATTGA

Upstream 100 bases:

>100_bases
GTCGGGCAAGTCAACACCGCTAATTCCTGGGTATACTCAGGCAATGATTACGGCTGAATCTGGAGAGATTCAGCCACTTT
ACCACTGACCAGGGAGCCTT

Downstream 100 bases:

>100_bases
CAATACAATGATAAAAATATAAGTCTTGCTTTAATTAGAGCGCCCGTTTAAATTATTTTTGTGCAGTTGACGTAATTCAT
GAAAATTAACCGGTCTGTTA

Product: putative transcritional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MFISDETLRVIHLVARHQSITTAAEQLNKVPSAISYTIKKAEESLGVELFIRKGRYIELSPAGSYFIEHSKTILGDLEAL
KRNTVLIHDGIERELTIAVNNIIPGDLLVAFIRDFERQFTSTTLTVDLEVYNGCWDALYSKRADLVYGAPHAVPSSESII
SEPVGQMEWDFVVSPLHPLAAKRHPLENSELRHYPAVCIRDTSVNFPPMQAWLLEGQKPIFVPDFATAIALIEQNVGIGY
IPHHLALPLLNSGKLLKKPMREHKHATKLFLAARSDGMGKACQWCIEYLRNPQLMTQFVFN

Sequences:

>Translated_301_residues
MFISDETLRVIHLVARHQSITTAAEQLNKVPSAISYTIKKAEESLGVELFIRKGRYIELSPAGSYFIEHSKTILGDLEAL
KRNTVLIHDGIERELTIAVNNIIPGDLLVAFIRDFERQFTSTTLTVDLEVYNGCWDALYSKRADLVYGAPHAVPSSESII
SEPVGQMEWDFVVSPLHPLAAKRHPLENSELRHYPAVCIRDTSVNFPPMQAWLLEGQKPIFVPDFATAIALIEQNVGIGY
IPHHLALPLLNSGKLLKKPMREHKHATKLFLAARSDGMGKACQWCIEYLRNPQLMTQFVFN
>Mature_301_residues
MFISDETLRVIHLVARHQSITTAAEQLNKVPSAISYTIKKAEESLGVELFIRKGRYIELSPAGSYFIEHSKTILGDLEAL
KRNTVLIHDGIERELTIAVNNIIPGDLLVAFIRDFERQFTSTTLTVDLEVYNGCWDALYSKRADLVYGAPHAVPSSESII
SEPVGQMEWDFVVSPLHPLAAKRHPLENSELRHYPAVCIRDTSVNFPPMQAWLLEGQKPIFVPDFATAIALIEQNVGIGY
IPHHLALPLLNSGKLLKKPMREHKHATKLFLAARSDGMGKACQWCIEYLRNPQLMTQFVFN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=294, Percent_Identity=34.3537414965986, Blast_Score=197, Evalue=9e-52,
Organism=Escherichia coli, GI1786508, Length=282, Percent_Identity=34.0425531914894, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI1786713, Length=279, Percent_Identity=33.6917562724014, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI87082024, Length=279, Percent_Identity=31.5412186379928, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1789492, Length=282, Percent_Identity=28.0141843971631, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI157672245, Length=168, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788706, Length=120, Percent_Identity=34.1666666666667, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33884; Mature: 33884

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFISDETLRVIHLVARHQSITTAAEQLNKVPSAISYTIKKAEESLGVELFIRKGRYIELS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEEEEECCCEEEEC
PAGSYFIEHSKTILGDLEALKRNTVLIHDGIERELTIAVNNIIPGDLLVAFIRDFERQFT
CCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
STTLTVDLEVYNGCWDALYSKRADLVYGAPHAVPSSESIISEPVGQMEWDFVVSPLHPLA
CEEEEEEEEEHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCCHHEEECCCCHHH
AKRHPLENSELRHYPAVCIRDTSVNFPPMQAWLLEGQKPIFVPDFATAIALIEQNVGIGY
HCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHCCCCCC
IPHHLALPLLNSGKLLKKPMREHKHATKLFLAARSDGMGKACQWCIEYLRNPQLMTQFVF
CCHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHC
N
C
>Mature Secondary Structure
MFISDETLRVIHLVARHQSITTAAEQLNKVPSAISYTIKKAEESLGVELFIRKGRYIELS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEEEEECCCEEEEC
PAGSYFIEHSKTILGDLEALKRNTVLIHDGIERELTIAVNNIIPGDLLVAFIRDFERQFT
CCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
STTLTVDLEVYNGCWDALYSKRADLVYGAPHAVPSSESIISEPVGQMEWDFVVSPLHPLA
CEEEEEEEEEHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCCCCCCHHEEECCCCHHH
AKRHPLENSELRHYPAVCIRDTSVNFPPMQAWLLEGQKPIFVPDFATAIALIEQNVGIGY
HCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHCCCCCC
IPHHLALPLLNSGKLLKKPMREHKHATKLFLAARSDGMGKACQWCIEYLRNPQLMTQFVF
CCHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]