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The map label for this gene is yhjC [H]

Identifier: 218691805

GI number: 218691805

Start: 4108827

End: 4109798

Strand: Direct

Name: yhjC [H]

Synonym: ECED1_4199

Alternate gene names: 218691805

Gene position: 4108827-4109798 (Clockwise)

Preceding gene: 218691803

Following gene: 218691806

Centisome position: 78.87

GC content: 51.75

Gene sequence:

>972_bases
ATGTTAGAAAAAACAATAAACAATGCGATATGCGCGCTACTGTTTCGTTGTGAACAACAATCGGTCAAAGAAATGGATAA
AATTCACGCAATGCAGTTGTTCATCAAAGTCGCGGAGCTGGAAAGTTTTTCCCGCGCGGCGGATTTCTTTGCTTTGCCAA
AGGGAAGTGTTTCGCGCCAGATACAGGCACTGGAACATCAACTTGGCACCCAGCTTCTCCAGCGCACCACGCGACGGGTC
AAACTCACGCCAGAAGGCATGACCTATTATCAACGGGCAAAAGATGTGTTGAGTAATCTCAGCGAACTGGACGGTCTGTT
TCAACAGGATGCCACCAGTATCAGCGGTAAATTACGCATCGACATCCCGTCAGGAATCGCGAAAAGCCTGTTACTGCCGC
GCTTGTCGGAATTTCTCTATCTGCATCCGGGAATTGAGCTGGAACTAAGTAGCCATGACCGTCCGGTAGATATTCTTCAT
GATGGTTTTGATTGCGTGATACGCACTGGCGCATTACCGGAAGATGGCGTTATCGCCCGTTCTCTCGGCAAACTGACCAT
GGTCAACTGTGCCAGTCCACACTATCTGACGCGCTTTGGTTATCCGCAAAGCCCCGATGATCTGACTTCACACGCAATAG
TGCGTTATACACCGCACCTGGGTGTACATCCGTTAGGTTTTGAGGTTGCCAGCGTTAATGGCGTCCAGTGGTTTAAGTCT
GGCGGCATGTTGACGGTAAACAGTAGCGAAAACTATCTCGCCGCCGGTATTGCCGGTCTGGGGATTATTCAGATCCCGCG
CATTGCCGTGCGCGAAGCCCTGCGTGCCGGGCGGCTTATTGAAGTGTTGCCTGGCTACCGTGCCGAGCCGCTGTCCCTTT
CACTGGTTTATCCGCAGCGTCGGGAGCTTTCCCGGCGTGTAAACCTGTTTATGCAGTGGCTGGCTGGCGTAATGAAAGAG
CACCTGGACTGA

Upstream 100 bases:

>100_bases
CTGTTTAAGGGAATTCACCTTTCTCATAAAGCTATTCCTCCCTTTTCCTGCTGAGAAATCGCCACATTCATCATGACAAC
ATTGTGAAACCCGGCATTAG

Downstream 100 bases:

>100_bases
CCGACTATACTTTTTAAGAATAACCACGACAGAAGGACAAAAGAGCGGATGACGCAGGAAAACGAGATCAAACGTCCCAC
CCAGGATCTGGAGCACGAGC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILH
DGFDCVIRTGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGIAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
HLD

Sequences:

>Translated_323_residues
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILH
DGFDCVIRTGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGIAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
HLD
>Mature_323_residues
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRV
KLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPSGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILH
DGFDCVIRTGALPEDGVIARSLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
GGMLTVNSSENYLAAGIAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKE
HLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=98.3277591973244, Blast_Score=603, Evalue=1e-174,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=31.1036789297659, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=28.6689419795222, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=28.7671232876712, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=28.0141843971631, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=29.0969899665552, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=28.4280936454849, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789173, Length=301, Percent_Identity=27.2425249169435, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786448, Length=282, Percent_Identity=24.822695035461, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788706, Length=174, Percent_Identity=30.4597701149425, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790011, Length=297, Percent_Identity=22.5589225589226, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790399, Length=145, Percent_Identity=31.0344827586207, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36018; Mature: 36018

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRI
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
DIPSGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIAR
ECCCHHHHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHCCHHHEEECCCCCCCCHHHH
SLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
HHCCEEEEECCCCCHHHHCCCCCCCHHHHHCEEEEECCCCCCCCCCEEEEECCCHHHCCC
GGMLTVNSSENYLAAGIAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
CCEEEECCCCCEEEHHHHHCCHHHCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCHH
RELSRRVNLFMQWLAGVMKEHLD
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRI
HHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
DIPSGIAKSLLLPRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIAR
ECCCHHHHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHCCHHHEEECCCCCCCCHHHH
SLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKS
HHCCEEEEECCCCCHHHHCCCCCCCHHHHHCEEEEECCCCCCCCCCEEEEECCCHHHCCC
GGMLTVNSSENYLAAGIAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
CCEEEECCCCCEEEHHHHHCCHHHCCHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCHH
RELSRRVNLFMQWLAGVMKEHLD
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]