Click here to switch to the map view.

The map label for this gene is ugpQ [H]

Identifier: 218691734

GI number: 218691734

Start: 4029492

End: 4030235

Strand: Reverse

Name: ugpQ [H]

Synonym: ECED1_4122

Alternate gene names: 218691734

Gene position: 4030235-4029492 (Counterclockwise)

Preceding gene: 218691735

Following gene: 218691732

Centisome position: 77.36

GC content: 55.51

Gene sequence:

>744_bases
ATGAGTAACTGGCCTTATCCCCGCATCGTCGCCCATCGTGGTGGCGGTAAGCTGGCCCCGGAAAACACCCTGGCAGCAAT
CGACGTCGGGGCAAGATACGGTCATAAGATGATCGAATTTGACGCAAAGTTATCGAAAGATGGCGAGATCTTCCTGCTCC
ATGACGACAATCTCGAACGTACCAGCAACGGTTGGGGCGTTGCGGGCGAGCTGAACTGGCAGGATTTACTGCGCGTGGAT
GCAGGCAGTTGGTACAGCAAAGCGTTTAAAGGTGAGCCGCTGCCGTTGCTTTCGCAGGTGGCGGAACGCTGCCGCGAACA
CGGGATGATGGCGAATATCGAAATCAAACCCACCACTGGCACTGGACCATTAACGGGCAAAACGGTGGCGTTGGCGGCAC
GCGAACTGTGGACCGGTATGACGCCGCCGCTGCTGTCATCGTTTGAGATTGATGCTTTAGAAGCCGCGCAACAGGCAGCA
CCGGAACTGCCGCGTGGTTTATTGCTTGATGAATGGCGCGACGACTGGCGAGAATTGACCGCGCGACTGGGCTGCGTCTC
TATTCATCTCAATCATAAGTTGCTCGATAAAGCGCGAGTGATGCAGTTGAAAGATGCCGGATTACGGATTCTGGTTTATA
CCGTCAATAAACCCCAGCGCGCGGCAGAGTTGCTGCGCTGGGGCGTGGATTGCATCTGTACCGATGCGATTGACGTGATT
GGTCCGAACTTTACGGCCCAATAG

Upstream 100 bases:

>100_bases
GACTGGCGCATCAGGAGCGCCCGACGGCAGGCAGCACGCTGTGGCTGCATCTGCCGGAAAATCAGCTGCATCTTTTTGAT
GGTGAAACAGGACAACGAGT

Downstream 100 bases:

>100_bases
TTTTCAACGGAATGTCAGGCTGCGGCGTGCTGGGCTGATTCAGCATGTCGCCGTTTCTCCTCTCCGGCAGAATATGCTGC
TGATTCAACGAACTATCCGG

Product: cytoplasmic glycerophosphodiester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MSNWPYPRIVAHRGGGKLAPENTLAAIDVGARYGHKMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVD
AGSWYSKAFKGEPLPLLSQVAERCREHGMMANIEIKPTTGTGPLTGKTVALAARELWTGMTPPLLSSFEIDALEAAQQAA
PELPRGLLLDEWRDDWRELTARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKPQRAAELLRWGVDCICTDAIDVI
GPNFTAQ

Sequences:

>Translated_247_residues
MSNWPYPRIVAHRGGGKLAPENTLAAIDVGARYGHKMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVD
AGSWYSKAFKGEPLPLLSQVAERCREHGMMANIEIKPTTGTGPLTGKTVALAARELWTGMTPPLLSSFEIDALEAAQQAA
PELPRGLLLDEWRDDWRELTARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKPQRAAELLRWGVDCICTDAIDVI
GPNFTAQ
>Mature_246_residues
SNWPYPRIVAHRGGGKLAPENTLAAIDVGARYGHKMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVDA
GSWYSKAFKGEPLPLLSQVAERCREHGMMANIEIKPTTGTGPLTGKTVALAARELWTGMTPPLLSSFEIDALEAAQQAAP
ELPRGLLLDEWRDDWRELTARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKPQRAAELLRWGVDCICTDAIDVIG
PNFTAQ

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycerophosphoryl diester phosphodiesterase family [H]

Homologues:

Organism=Homo sapiens, GI284055245, Length=89, Percent_Identity=40.4494382022472, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI284055240, Length=89, Percent_Identity=40.4494382022472, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI284055242, Length=89, Percent_Identity=40.4494382022472, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI21361649, Length=89, Percent_Identity=40.4494382022472, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI7706617, Length=116, Percent_Identity=33.6206896551724, Blast_Score=71, Evalue=9e-13,
Organism=Escherichia coli, GI1789858, Length=247, Percent_Identity=97.5708502024291, Blast_Score=498, Evalue=1e-142,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27363; Mature: 27231

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNWPYPRIVAHRGGGKLAPENTLAAIDVGARYGHKMIEFDAKLSKDGEIFLLHDDNLER
CCCCCCCEEEEECCCCCCCCCCCEEEEECCHHHCCEEEEECCCCCCCCCEEEEECCCCCC
TSNGWGVAGELNWQDLLRVDAGSWYSKAFKGEPLPLLSQVAERCREHGMMANIEIKPTTG
CCCCCCEEEECCHHHHHEECCCCHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC
TGPLTGKTVALAARELWTGMTPPLLSSFEIDALEAAQQAAPELPRGLLLDEWRDDWRELT
CCCCCCCHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
ARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKPQRAAELLRWGVDCICTDAIDVI
HHHCEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCEEEHHHHHHH
GPNFTAQ
CCCCCCC
>Mature Secondary Structure 
SNWPYPRIVAHRGGGKLAPENTLAAIDVGARYGHKMIEFDAKLSKDGEIFLLHDDNLER
CCCCCCEEEEECCCCCCCCCCCEEEEECCHHHCCEEEEECCCCCCCCCEEEEECCCCCC
TSNGWGVAGELNWQDLLRVDAGSWYSKAFKGEPLPLLSQVAERCREHGMMANIEIKPTTG
CCCCCCEEEECCHHHHHEECCCCHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC
TGPLTGKTVALAARELWTGMTPPLLSSFEIDALEAAQQAAPELPRGLLLDEWRDDWRELT
CCCCCCCHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
ARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKPQRAAELLRWGVDCICTDAIDVI
HHHCEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCEEEHHHHHHH
GPNFTAQ
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2541415; 1851953; 8041620; 9278503; 3062310 [H]