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The map label for this gene is yrfD [H]

Identifier: 218691671

GI number: 218691671

Start: 3954056

End: 3954835

Strand: Reverse

Name: yrfD [H]

Synonym: ECED1_4053

Alternate gene names: 218691671

Gene position: 3954835-3954056 (Counterclockwise)

Preceding gene: 218691673

Following gene: 218691670

Centisome position: 75.92

GC content: 56.79

Gene sequence:

>780_bases
ATGGCATTTAAGAACTGGCAAATTGGTTTGCATTTACAACAGCAAGAAGCGGTAGCGGTTGCTATCGTGCGGAGCGCAAA
AGAATGCTTATTGCACCGCTGGTGGCGGTTGCCACTGGAGAACGACATTATCAAAGATGGGCGGATTGTTGATGTGCAGC
GGCTGGCTAACACGTTGTTACCGTGGAGTCGTGAACTGCCGCAGCGTCATCACATTATGTTGGCGTTTCCCGCCAGTCGC
ACATTACAGCGGTCATTTCCACGCCCGTCGATGTCCCTCGGTGAGCGGGAGCAAATGGCCTGGCTGTCCGGGACGATGGC
CCGTGAACTGGATATGGATCCGGACTCCCTGCGCTTCGATTACAGCGAAGACGCACTCAGTCCCGCCTATAACGTGACTG
CCGCGCAAAGCAAAGAGCTGGCAACGCTGCTTACTCTGGCAGAAAGGTTGCGTGTTCATGTTAGCGCGATCACTCCGGAT
GCCAGTGCATTACAGCGATTCCTACCTTTTTTACCTTCTCATCAGCAATGTCTGGCCTGGCGTGATAACGAACAGTGGCT
GTGGGCGACGCGCTATAGCTGGGGGCGCAAACTGGCGGTGGGGATGACTAGCGCGAAGGAGCTGGCGGCAGCGTTATCTG
TTGATCCCGAAAGCGTCGCGCTATGTGGCGAAGGCGGATTTGACCCCTGGGAGGCGGTTTCTGTTCGTCAGCCGCCGCTA
CCGCCACCAGGTGGAGACTTTGCCATCGCGCTGGGGCTGGCGCTTGGGAAGGTGTACTGA

Upstream 100 bases:

>100_bases
TTCATTTGGGCAGTTTATAAACAAACGCGCGGTAGTATAAAGGCAAGCCAGACGCATTGATATACCTGTCAGAGTGACGG
GTGATAAGGAGATCATCACA

Downstream 100 bases:

>100_bases
TGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTTCGTTTCTGGTTGCTGATGTTCGTT
GCGCCTTTGCTGCTGGCCGT

Product: putative pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MAFKNWQIGLHLQQQEAVAVAIVRSAKECLLHRWWRLPLENDIIKDGRIVDVQRLANTLLPWSRELPQRHHIMLAFPASR
TLQRSFPRPSMSLGEREQMAWLSGTMARELDMDPDSLRFDYSEDALSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
ASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPESVALCGEGGFDPWEAVSVRQPPL
PPPGGDFAIALGLALGKVY

Sequences:

>Translated_259_residues
MAFKNWQIGLHLQQQEAVAVAIVRSAKECLLHRWWRLPLENDIIKDGRIVDVQRLANTLLPWSRELPQRHHIMLAFPASR
TLQRSFPRPSMSLGEREQMAWLSGTMARELDMDPDSLRFDYSEDALSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
ASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPESVALCGEGGFDPWEAVSVRQPPL
PPPGGDFAIALGLALGKVY
>Mature_258_residues
AFKNWQIGLHLQQQEAVAVAIVRSAKECLLHRWWRLPLENDIIKDGRIVDVQRLANTLLPWSRELPQRHHIMLAFPASRT
LQRSFPRPSMSLGEREQMAWLSGTMARELDMDPDSLRFDYSEDALSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDA
SALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPESVALCGEGGFDPWEAVSVRQPPLP
PPGGDFAIALGLALGKVY

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082257, Length=259, Percent_Identity=95.7528957528958, Blast_Score=507, Evalue=1e-145,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29091; Mature: 28960

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKNWQIGLHLQQQEAVAVAIVRSAKECLLHRWWRLPLENDIIKDGRIVDVQRLANTLL
CCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHC
PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQMAWLSGTMARELDMDPDSLRFD
CCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEC
YSEDALSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFLPSHQQCLAW
CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCCHHEEE
RDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPESVALCGEGGFDPWEAVSVRQPPL
ECCCCEEEEEECCCCCEEEEECCHHHHHHHHHCCCHHHEEEECCCCCCHHHCCCCCCCCC
PPPGGDFAIALGLALGKVY
CCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AFKNWQIGLHLQQQEAVAVAIVRSAKECLLHRWWRLPLENDIIKDGRIVDVQRLANTLL
CCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHC
PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQMAWLSGTMARELDMDPDSLRFD
CCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEC
YSEDALSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFLPSHQQCLAW
CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCCHHEEE
RDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPESVALCGEGGFDPWEAVSVRQPPL
ECCCCEEEEEECCCCCEEEEECCHHHHHHHHHCCCHHHEEEECCCCCCHHHCCCCCCCCC
PPPGGDFAIALGLALGKVY
CCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]