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The map label for this gene is flgD [H]

Identifier: 218689028

GI number: 218689028

Start: 1217840

End: 1218535

Strand: Direct

Name: flgD [H]

Synonym: ECED1_1219

Alternate gene names: 218689028

Gene position: 1217840-1218535 (Clockwise)

Preceding gene: 218689027

Following gene: 218689029

Centisome position: 23.38

GC content: 53.59

Gene sequence:

>696_bases
ATGTCTATTGCGGTAACCACCACCGATCCGACGAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAA
CGCCGCAGATTTACAAAGCAGTTTTCTGACTTTGTTGGTGGCGCAGCTGAAAAACCAGGACCCGACCAATCCAATGGAAA
ACAACGAGCTGACGTCGCAATTGGCACAAATCAGCACGGTCAGTGGGATTGAAAAACTCAATACCACGCTCGGATCTATT
TCCGGACAGATTGATAACAGCCAGTCGTTACAGGCCAGTAACCTTATCGGTCATGGCGTGATGATCCCCGGTACCACTGT
TCTTGCGGGAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGTTGCAACAGGCAGCAGACA
AAGTGACGGCCACCATCACCGATAAAAACGGCGCGGTCGTCCGTACCATTGATATCGGTGAACTGACTGCCGGAGTCCAT
AGTTTCACCTGGGACGGTACGTTGACTGACGGCAGCACTGCGCTGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAA
CGGTGGTACACAACTGGTTGCCCAACCGCTGCAGTTTGCTCTGGTGCAGGGGGTGATCCGCGGCAACAACGGTAATACGC
TGGATCTCGGCACTTACGGCACCACTACCCTCGACGAAGTACGGCAGATAATTTAA

Upstream 100 bases:

>100_bases
TGTCGGCGTCACGCAGTTATCAGGCCAATGTTGAAGTGCTCAACACGGTGAAAAGCATGATGCTGAAAACCCTTACGCTC
GGTCAATAAAGGAGAAAGCT

Downstream 100 bases:

>100_bases
GCCTTCACATTTCAGGAGTCAGTCATGGCCTTTTCTCAAGCGGTTAGCGGATTAAACGCTGCCGCCACCAACCTCGATGT
TATTGGCAACAATATCGCCA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSI
SGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVH
SFTWDGTLTDGSTALNGSYNVAISASNGGTQLVAQPLQFALVQGVIRGNNGNTLDLGTYGTTTLDEVRQII

Sequences:

>Translated_231_residues
MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSI
SGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVH
SFTWDGTLTDGSTALNGSYNVAISASNGGTQLVAQPLQFALVQGVIRGNNGNTLDLGTYGTTTLDEVRQII
>Mature_230_residues
SIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSIS
GQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVHS
FTWDGTLTDGSTALNGSYNVAISASNGGTQLVAQPLQFALVQGVIRGNNGNTLDLGTYGTTTLDEVRQII

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=231, Percent_Identity=99.1341991341991, Blast_Score=444, Evalue=1e-126,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23618; Mature: 23487

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQ
CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEECCCCEEEEECCCCCCCEEE
TTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVHSFTWDGTLTDGSTALNGSYN
CCCCCCCHHHHHCEEEEEEECCCCCEEEEEECCHHHCCCEEEEECCEECCCCEEECCCEE
VAISASNGGTQLVAQPLQFALVQGVIRGNNGNTLDLGTYGTTTLDEVRQII
EEEEECCCCHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCHHHHHHHC
>Mature Secondary Structure 
SIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLKNQDPTNPMENNELTSQ
EEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMIPGTTVLAGTGSEEGAVTT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCEECCCCEEEEECCCCCCCEEE
TTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVHSFTWDGTLTDGSTALNGSYN
CCCCCCCHHHHHCEEEEEEECCCCCEEEEEECCHHHCCCEEEEECCEECCCCEEECCCEE
VAISASNGGTQLVAQPLQFALVQGVIRGNNGNTLDLGTYGTTTLDEVRQII
EEEEECCCCHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]