Definition | Escherichia coli ED1a chromosome, complete genome. |
---|---|
Accession | NC_011745 |
Length | 5,209,548 |
Click here to switch to the map view.
The map label for this gene is ribD [H]
Identifier: 218688277
GI number: 218688277
Start: 454302
End: 455405
Strand: Direct
Name: ribD [H]
Synonym: ECED1_0437
Alternate gene names: 218688277
Gene position: 454302-455405 (Clockwise)
Preceding gene: 218688276
Following gene: 218688278
Centisome position: 8.72
GC content: 54.98
Gene sequence:
>1104_bases GTGCAGGACGAGTATTACATGGCGCGGGCGCTAAAGCTGGCGCAACGAGGACGTTTTACCACGCATCCCAACCCGAATGT CGGGTGCGTCATTGTCAAAGATGGCGAAATTGTCGGTGAAGGTTACCATCAACGCGCGGGTGAACCGCATGCCGAGGTAC ACGCGTTGCGCATGGCCGGCGAAAAAGCCAAAGGCGCAACGGCGTATGTCACACTCGAACCCTGTAGCCATCATGGTCGT ACGCCACCGTGTTGTGATGCATTAATTGCTGCGGGCGTGGCGCGCGTGGTTGCTGCAATGCAAGACCCCAATCCGCAGGT CGCTGGACGTGGACTTTACCGTCTGCAACAGGCTGGCATTGACGTCAGCCACGGGCTGATGATGAGTGAAGCTGAGCAAT TGAATAAAGGCTTTCTCAAACGGATGCGCACCGGCTTTCCTTATATTCAGTTAAAACTTGGCGCATCGCTTGATGGTCGC ACGGCGATGGCGAGTGGCGAAAGCCAGTGGATCACTTCACCTCAGGCGAGGCGCGACGTACAACGACTGCGCGCGCAAAG TCATGCCATTTTAACCAGCAGCGCCACGGTGCTGGCGGATGATCCAGCCTTAACAGTGCGTTGGTCTGAACTGGATGAAC AAACTCAGGGGCTCTACCCGCAACAAAATCTCCGCCAGCCGGTACGTATTGTGATTGATAGCCAAAATCGCGTGACGCCG GAACATCGCATTGTGCAGCAGCCCGGCGAAACCTGGTTCGCGCGTACGCAGGAAGATTCTCGTGAGTGGCCGGAAACGGT GCGTACCTTGCTGATTCCAGAGCATAAAGGTCACCTGGATCTGGTTGTACTAATGATGCAACTGGGTAAACAGCAGATTA ACAGCATCTGGGTGGAAGCGGGGCCAACGCTCGCTGGCGCATTGCTACAGGCGGGTTTAGTCGATGAGCTGATTGTCTAT ATCGCACCTAAACTATTAGGCAACGACGCCCGTGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCTCCCCA ATTTAAATTCAAAGAGATACGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGGGCATGA
Upstream 100 bases:
>100_bases GCTCGATAAAGTCGCCTATATCCGTTTTGCCTCTGTCTACCGCAGTTTCGAAGATATCAAAGAATTTGGCGAAGAGATCG CGCGCCTGGAGGACTAAGCC
Downstream 100 bases:
>100_bases TCTCCCGGCTCGAAAGGGAAGCAGCGCACGAAATATTATGCTAAAATCCGCCCCCCTGCGGGGCCATACTCGAACCCGAA GGAAGAAAATGAACATTATT
Product: bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
Products: NA
Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]
Number of amino acids: Translated: 367; Mature: 367
Protein sequence:
>367_residues MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGR TPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGR TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTP EHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVY IAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA
Sequences:
>Translated_367_residues MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGR TPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGR TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTP EHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVY IAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA >Mature_367_residues MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGR TPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGR TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTP EHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVY IAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA
Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]
COG id: COG1985
COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the HTP reductase family [H]
Homologues:
Organism=Escherichia coli, GI1786616, Length=367, Percent_Identity=98.3651226158038, Blast_Score=746, Evalue=0.0, Organism=Escherichia coli, GI145693172, Length=168, Percent_Identity=32.7380952380952, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016192 - InterPro: IPR002125 - InterPro: IPR016193 - InterPro: IPR004794 - InterPro: IPR011549 - InterPro: IPR002734 [H]
Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]
EC number: =3.5.4.26; =1.1.1.193 [H]
Molecular weight: Translated: 40395; Mature: 40395
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: PS00903 CYT_DCMP_DEAMINASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAG CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEECCCHHHCCCCCHHHHHHHHHCC EKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGI CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHCCC DVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDV CHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH QRLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTP HHHHHHHHEEEECCCEEEECCCEEEEEHHHHHHHHHCCCCHHHCCCCEEEEECCCCCCCH EHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHEEECC GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHCCCCHHHHHHHHCCHHH CLHLVGA HHHCCCC >Mature Secondary Structure MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAG CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEECCCHHHCCCCCHHHHHHHHHCC EKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGI CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHCCC DVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDV CHHHCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH QRLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTP HHHHHHHHEEEECCCEEEECCCEEEEEHHHHHHHHHCCCCHHHCCCCEEEEECCCCCCCH EHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHEEECC GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHCCCCHHHHHHHHCCHHH CLHLVGA HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1406588; 9278503; 9068650 [H]