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The map label for this gene is sorC [H]

Identifier: 218549833

GI number: 218549833

Start: 2581941

End: 2582891

Strand: Direct

Name: sorC [H]

Synonym: EFER_2516

Alternate gene names: 218549833

Gene position: 2581941-2582891 (Clockwise)

Preceding gene: 218549830

Following gene: 218549834

Centisome position: 56.27

GC content: 49.84

Gene sequence:

>951_bases
ATGGCTAAGCAGGATGAACAGCGGCTACTGGTGAAGATCGCCACTCTTTACTATCTTGAGGGGCGAAAACAGTCTGACAT
CGCCCAACTTCTCTCGCTTTCTCAGTCATTTATCTCCAGAGCGCTAACCCGTTGCCAGAAAGAAGGCGTGGTTAAAATCA
GCGTTGTCCAGCCGTCAAATATCTTTCTCAATCTGGAAAAAGGCATTGAAGAGCGTTACGGCATTAAACAAGCGATTGTT
GTCGATACCGAAGATGATGCCACTGACCATACCATTAAACGTGCTATCGGCTCTGCCGCCGCGCACTATCTGGAAACGCG
TTTAAGACCAAAAGATTTCATTGGCGTCTCTTCCTGGAGTTCTACGATTCGCGCGATGGTCGATGAAGTTCACGCCCAAA
ACTTAAAAGCCAGCGGCGTTATTCAGCTGCTGGGCGGCGTGGGGCCAAACGGCAATGTGCAGGCAACTATTTTGACACAG
ACCCTGGCCCAGCATCTGAATTGCGAAGCCTGGTTACTTCCTTCTCAAAGCATTGAAGGTTCGGTAGAAGAGAAAAAACG
CCTGGTGGCAAGCCAGGATGTGGCTGACGTTATCGCCAGATTTGACGACGTCGATATCGCCATTGTCGGCATCGGTATCC
TTGAACCCTCGCAGTTACTAAAAACCTCGGGCAACTATTATCACGAGGATATGTTACAGGTACTGGCGGATCGCGGTGCT
GTGGGCGATATCTGCCTGCATTACTACGATAAACATGGTCAGCCAGTGTTGCAGGACGATGAAGATCCAGTGATTGGTAT
GGCACTGGATAAAATCAAAAAATGCCCGAATGTGGTGGCGCTGGCGGGCGGCAAAGACAAAGTTGCCGCCATCAAAGGCG
CCATGCAGGGTGGTTATATCGATGTTTTGATCACTGATTACCCCACCGCCAGAATGCTGATTGCGGATTAA

Upstream 100 bases:

>100_bases
TTAAAGTTAGAACTCCATCACACTTAACTGTCTTCTTTTTTCGCGTATGATAAAAGCCTCTAAGATAAGGGCGGTACGTT
AATGATTTACGGGGAAATAT

Downstream 100 bases:

>100_bases
TCCTCTCCTCCCTTTCTTCTGCCCGCCTTTGCGAAAAAATCTTCTCGCAAAGGCGATTGCTTAAAAATCTTTTAATATCA
ATAAACTGAAAGGATTCAAC

Product: transcriptional regulator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MAKQDEQRLLVKIATLYYLEGRKQSDIAQLLSLSQSFISRALTRCQKEGVVKISVVQPSNIFLNLEKGIEERYGIKQAIV
VDTEDDATDHTIKRAIGSAAAHYLETRLRPKDFIGVSSWSSTIRAMVDEVHAQNLKASGVIQLLGGVGPNGNVQATILTQ
TLAQHLNCEAWLLPSQSIEGSVEEKKRLVASQDVADVIARFDDVDIAIVGIGILEPSQLLKTSGNYYHEDMLQVLADRGA
VGDICLHYYDKHGQPVLQDDEDPVIGMALDKIKKCPNVVALAGGKDKVAAIKGAMQGGYIDVLITDYPTARMLIAD

Sequences:

>Translated_316_residues
MAKQDEQRLLVKIATLYYLEGRKQSDIAQLLSLSQSFISRALTRCQKEGVVKISVVQPSNIFLNLEKGIEERYGIKQAIV
VDTEDDATDHTIKRAIGSAAAHYLETRLRPKDFIGVSSWSSTIRAMVDEVHAQNLKASGVIQLLGGVGPNGNVQATILTQ
TLAQHLNCEAWLLPSQSIEGSVEEKKRLVASQDVADVIARFDDVDIAIVGIGILEPSQLLKTSGNYYHEDMLQVLADRGA
VGDICLHYYDKHGQPVLQDDEDPVIGMALDKIKKCPNVVALAGGKDKVAAIKGAMQGGYIDVLITDYPTARMLIAD
>Mature_315_residues
AKQDEQRLLVKIATLYYLEGRKQSDIAQLLSLSQSFISRALTRCQKEGVVKISVVQPSNIFLNLEKGIEERYGIKQAIVV
DTEDDATDHTIKRAIGSAAAHYLETRLRPKDFIGVSSWSSTIRAMVDEVHAQNLKASGVIQLLGGVGPNGNVQATILTQT
LAQHLNCEAWLLPSQSIEGSVEEKKRLVASQDVADVIARFDDVDIAIVGIGILEPSQLLKTSGNYYHEDMLQVLADRGAV
GDICLHYYDKHGQPVLQDDEDPVIGMALDKIKKCPNVVALAGGKDKVAAIKGAMQGGYIDVLITDYPTARMLIAD

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=316, Percent_Identity=25.9493670886076, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87082414, Length=309, Percent_Identity=26.8608414239482, Blast_Score=100, Evalue=9e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34481; Mature: 34350

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQDEQRLLVKIATLYYLEGRKQSDIAQLLSLSQSFISRALTRCQKEGVVKISVVQPSN
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
IFLNLEKGIEERYGIKQAIVVDTEDDATDHTIKRAIGSAAAHYLETRLRPKDFIGVSSWS
EEEEHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHH
STIRAMVDEVHAQNLKASGVIQLLGGVGPNGNVQATILTQTLAQHLNCEAWLLPSQSIEG
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCEEECCCCCCCC
SVEEKKRLVASQDVADVIARFDDVDIAIVGIGILEPSQLLKTSGNYYHEDMLQVLADRGA
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHCCCC
VGDICLHYYDKHGQPVLQDDEDPVIGMALDKIKKCPNVVALAGGKDKVAAIKGAMQGGYI
HHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEE
DVLITDYPTARMLIAD
EEEEECCCCCEEEECC
>Mature Secondary Structure 
AKQDEQRLLVKIATLYYLEGRKQSDIAQLLSLSQSFISRALTRCQKEGVVKISVVQPSN
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
IFLNLEKGIEERYGIKQAIVVDTEDDATDHTIKRAIGSAAAHYLETRLRPKDFIGVSSWS
EEEEHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHH
STIRAMVDEVHAQNLKASGVIQLLGGVGPNGNVQATILTQTLAQHLNCEAWLLPSQSIEG
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCEEECCCCCCCC
SVEEKKRLVASQDVADVIARFDDVDIAIVGIGILEPSQLLKTSGNYYHEDMLQVLADRGA
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHCCCC
VGDICLHYYDKHGQPVLQDDEDPVIGMALDKIKKCPNVVALAGGKDKVAAIKGAMQGGYI
HHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEE
DVLITDYPTARMLIAD
EEEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]