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The map label for this gene is ybdO [H]

Identifier: 218549808

GI number: 218549808

Start: 2551769

End: 2552740

Strand: Direct

Name: ybdO [H]

Synonym: EFER_2490

Alternate gene names: 218549808

Gene position: 2551769-2552740 (Clockwise)

Preceding gene: 218549807

Following gene: 218549809

Centisome position: 55.61

GC content: 36.11

Gene sequence:

>972_bases
ATGGATGCAGGCAAATGGGAACAGGAGTTACATATGGCCAATTTGTACGATCTAAAAAAATTCGATTTAAATCTGCTGGT
TATTTTTGAATGTATTTATGAAAATCTAAGTATCAGTAAAGCTGCGGAAACTCTTTATATCACGCCATCAGCAGTTAGCC
AGTCACTTCAACGTTTACGACTGCAGTTTAATGATCCATTGTTTGTTCGTGCAGGCAAAGGTATATCGCCAACTATTGTC
GGTATAAATTTGCATCACCACCTGGGAAAAAATTTGGATGGGCTTGAGCAAATCATCAATATTATGAATGCATCGGAGCT
AAAAAATAAATTTGTTATTTACGGGCCGCAATTGATTTCAACGTTCAACGTCACCCGTTTAATTACCTGCCTGCGTGAGG
AAGCATCAGTAGAGATCGAATATCATGATATTTTAACGTCAACCGAAACCGGAGAAGAGTTACTGGCTCATCGCAAAGCT
GATCTGGTTGTGACAATGCTTCCTATGATCAATCGCTCCGTACTTTGCATGCCATTTCAGTCCATTAGCAATGTATTAGT
TTGTCGTAATAATCATCCACGCATGAAAAATGAGTGCTCTCTTGATGATATTCTGAAAGAAGAATTTACTATGCTTATGT
CTGAAGCACCTGGATTGGACGAATATCAGTCCCGCATGGATAAAATAATGGTAAATCGAAAGATTGCATTCCGCAGTCAG
TCATTAACTTCTATTATTAATATTATTGCAGAAACTGATATTATTGGGATCATTCCACAAAAACTTTATAAAATATATCG
TTCCATTCTGAATCTGAGAGAAATAAAGATAGATTATACTCTCCCTTTAATGCGTCTGTATATTTCGTACAATAAATCAT
CACTTTATAATAAAGCATTTTCAAATTTCATTACCAGGATTGCAGACGAGAAACAATCGAGCCAAAAAAGCATTCACTCG
ACAAATAATTAA

Upstream 100 bases:

>100_bases
TCAGTCATAGAGAACTGTGTTATTTTAGCGCCGCTGACGATGTATGCTATCCATTATATAATTAACAGGAATGTATTTTT
TTAATTCATAATAAATATAA

Downstream 100 bases:

>100_bases
ATCACTTGAATTCATTATATGTATATAAAAATAATAATAGAGCAATGATGAATCATCATCTCTTATAATTGACATTATTC
AACCAGAATTTATGTGAGAG

Product: HTH-type transcriptional regulator ybdO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MDAGKWEQELHMANLYDLKKFDLNLLVIFECIYENLSISKAAETLYITPSAVSQSLQRLRLQFNDPLFVRAGKGISPTIV
GINLHHHLGKNLDGLEQIINIMNASELKNKFVIYGPQLISTFNVTRLITCLREEASVEIEYHDILTSTETGEELLAHRKA
DLVVTMLPMINRSVLCMPFQSISNVLVCRNNHPRMKNECSLDDILKEEFTMLMSEAPGLDEYQSRMDKIMVNRKIAFRSQ
SLTSIINIIAETDIIGIIPQKLYKIYRSILNLREIKIDYTLPLMRLYISYNKSSLYNKAFSNFITRIADEKQSSQKSIHS
TNN

Sequences:

>Translated_323_residues
MDAGKWEQELHMANLYDLKKFDLNLLVIFECIYENLSISKAAETLYITPSAVSQSLQRLRLQFNDPLFVRAGKGISPTIV
GINLHHHLGKNLDGLEQIINIMNASELKNKFVIYGPQLISTFNVTRLITCLREEASVEIEYHDILTSTETGEELLAHRKA
DLVVTMLPMINRSVLCMPFQSISNVLVCRNNHPRMKNECSLDDILKEEFTMLMSEAPGLDEYQSRMDKIMVNRKIAFRSQ
SLTSIINIIAETDIIGIIPQKLYKIYRSILNLREIKIDYTLPLMRLYISYNKSSLYNKAFSNFITRIADEKQSSQKSIHS
TNN
>Mature_323_residues
MDAGKWEQELHMANLYDLKKFDLNLLVIFECIYENLSISKAAETLYITPSAVSQSLQRLRLQFNDPLFVRAGKGISPTIV
GINLHHHLGKNLDGLEQIINIMNASELKNKFVIYGPQLISTFNVTRLITCLREEASVEIEYHDILTSTETGEELLAHRKA
DLVVTMLPMINRSVLCMPFQSISNVLVCRNNHPRMKNECSLDDILKEEFTMLMSEAPGLDEYQSRMDKIMVNRKIAFRSQ
SLTSIINIIAETDIIGIIPQKLYKIYRSILNLREIKIDYTLPLMRLYISYNKSSLYNKAFSNFITRIADEKQSSQKSIHS
TNN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786820, Length=296, Percent_Identity=65.2027027027027, Blast_Score=404, Evalue=1e-114,
Organism=Escherichia coli, GI87081766, Length=289, Percent_Identity=28.719723183391, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87081684, Length=299, Percent_Identity=24.4147157190635, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1790147, Length=189, Percent_Identity=28.042328042328, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37085; Mature: 37085

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAGKWEQELHMANLYDLKKFDLNLLVIFECIYENLSISKAAETLYITPSAVSQSLQRLR
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHCCEEEECHHHHHHHHHHHH
LQFNDPLFVRAGKGISPTIVGINLHHHLGKNLDGLEQIINIMNASELKNKFVIYGPQLIS
HHCCCCEEEEECCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHCHHHHCCCEEEECCHHHH
TFNVTRLITCLREEASVEIEYHDILTSTETGEELLAHRKADLVVTMLPMINRSVLCMPFQ
HHHHHHHHHHHHHHCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEHH
SISNVLVCRNNHPRMKNECSLDDILKEEFTMLMSEAPGLDEYQSRMDKIMVNRKIAFRSQ
HHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
SLTSIINIIAETDIIGIIPQKLYKIYRSILNLREIKIDYTLPLMRLYISYNKSSLYNKAF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHCCHHHHHHHHH
SNFITRIADEKQSSQKSIHSTNN
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDAGKWEQELHMANLYDLKKFDLNLLVIFECIYENLSISKAAETLYITPSAVSQSLQRLR
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHCCEEEECHHHHHHHHHHHH
LQFNDPLFVRAGKGISPTIVGINLHHHLGKNLDGLEQIINIMNASELKNKFVIYGPQLIS
HHCCCCEEEEECCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHCHHHHCCCEEEECCHHHH
TFNVTRLITCLREEASVEIEYHDILTSTETGEELLAHRKADLVVTMLPMINRSVLCMPFQ
HHHHHHHHHHHHHHCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEHH
SISNVLVCRNNHPRMKNECSLDDILKEEFTMLMSEAPGLDEYQSRMDKIMVNRKIAFRSQ
HHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
SLTSIINIIAETDIIGIIPQKLYKIYRSILNLREIKIDYTLPLMRLYISYNKSSLYNKAF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHCCHHHHHHHHH
SNFITRIADEKQSSQKSIHSTNN
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]