Click here to switch to the map view.

The map label for this gene is rnk [H]

Identifier: 218549803

GI number: 218549803

Start: 2546865

End: 2547275

Strand: Direct

Name: rnk [H]

Synonym: EFER_2484

Alternate gene names: 218549803

Gene position: 2546865-2547275 (Clockwise)

Preceding gene: 218549802

Following gene: 218549804

Centisome position: 55.5

GC content: 53.28

Gene sequence:

>411_bases
ATGTCCAGACCAACAATTATCATTAACGACCTTGATGCAGAACGCATCGATATGCTGCTGGAACAACCTGCATACGCTGG
CCTGCCCATTGCCGATGCGTTAAATGCGGAACTTGACCGCGCACAGATGTGCTCGCCTGAAACCATGCCAAATGATGTGG
TGACCATGAATAGTCGGGTTAAATTCCGTAATCTGAGCGATGGCGAAGTCCGTGTGCGCACGCTGGTTTATCCGGCCAAA
ATGACTGACAGCAACACACAACTTTCCGTAATGGCTCCTGTGGGAGCAGCCCTCCTGGGACTCCGTGTTGGTGATACCAT
CCACTGGGAACTGCCGGGCGGCACCTCCACGCACCTTGAAGTGCTGGAACTGGAATACCAGCCAGAAGCTGCTGGCGACT
ACCTGCTTTAA

Upstream 100 bases:

>100_bases
TATCATCATACGAGTTAAACCCTCGCCGCCTGACGGTGAGGGTTTTCTTTTGGGTGTATTTACCTGCGGCATTCGCAGCA
CTGATGACATGGAGTAACAA

Downstream 100 bases:

>100_bases
TTCCATTCTGAACAAGCGCCAGTGCGCTTTGCCCAGAGGATGCTTCTGCATCCTCTTTGCGGTCAAATATCAACCATATT
TATCATTCTTGTCTGCTTTA

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MSRPTIIINDLDAERIDMLLEQPAYAGLPIADALNAELDRAQMCSPETMPNDVVTMNSRVKFRNLSDGEVRVRTLVYPAK
MTDSNTQLSVMAPVGAALLGLRVGDTIHWELPGGTSTHLEVLELEYQPEAAGDYLL

Sequences:

>Translated_136_residues
MSRPTIIINDLDAERIDMLLEQPAYAGLPIADALNAELDRAQMCSPETMPNDVVTMNSRVKFRNLSDGEVRVRTLVYPAK
MTDSNTQLSVMAPVGAALLGLRVGDTIHWELPGGTSTHLEVLELEYQPEAAGDYLL
>Mature_135_residues
SRPTIIINDLDAERIDMLLEQPAYAGLPIADALNAELDRAQMCSPETMPNDVVTMNSRVKFRNLSDGEVRVRTLVYPAKM
TDSNTQLSVMAPVGAALLGLRVGDTIHWELPGGTSTHLEVLELEYQPEAAGDYLL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=136, Percent_Identity=95.5882352941177, Blast_Score=268, Evalue=1e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14926; Mature: 14795

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPTIIINDLDAERIDMLLEQPAYAGLPIADALNAELDRAQMCSPETMPNDVVTMNSRV
CCCCEEEEECCCHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCEEEECCEE
KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDTIHWELPGGTSTHLE
EEECCCCCCEEEEEEEEECEECCCCCEEEEECCCCHHHHEEECCCEEEEECCCCCCCEEE
VLELEYQPEAAGDYLL
EEEEEECCCCCCCCCC
>Mature Secondary Structure 
SRPTIIINDLDAERIDMLLEQPAYAGLPIADALNAELDRAQMCSPETMPNDVVTMNSRV
CCCEEEEECCCHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCEEEECCEE
KFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDTIHWELPGGTSTHLE
EEECCCCCCEEEEEEEEECEECCCCCEEEEECCCCHHHHEEECCCEEEEECCCCCCCEEE
VLELEYQPEAAGDYLL
EEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]