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The map label for this gene is intB [H]

Identifier: 218549294

GI number: 218549294

Start: 2004648

End: 2004971

Strand: Direct

Name: intB [H]

Synonym: EFER_1956

Alternate gene names: 218549294

Gene position: 2004648-2004971 (Clockwise)

Preceding gene: 218549291

Following gene: 218549315

Centisome position: 43.69

GC content: 45.99

Gene sequence:

>324_bases
TTGCAGGTAAAGCTGGTTCGATTTGCGTTTTACCAGTACGCGGAGGGAACCGTCATGTCACTTACTGATACTAAAGCAAA
AAATGCCAGACCAGCGGAAAAAGCCGTCAAGCTCACTGATGGATTTGGTCTCTACCTTCTTGTGTATCCCAATGGTTCAA
AATACTGGCAGTTAGGCTACCGCTTCACTGGTAAACAGAAAGTGTTTTCCATTGGTGTCTACCCTGCGGTTTCTCTTGCT
GATGCCAGACAAAACGCAAAACACGATGCGTTATATCAACTCGCAAGTACAGGATACATCCTCGCAATCAACGAGCAGCG
TTAG

Upstream 100 bases:

>100_bases
AGACGTTCACTGACGTCTGCTTTCTGCTTTTATATCAATTGGTTATCCCCTTCTTCAGGTTCATCTTCGTTCGTTAAAAA
CCGCTCGAATCCACACTACT

Downstream 100 bases:

>100_bases
TCATTTATATTATTAAAATCTTGATAAAGTAAAATAATATCATCTGTCATTAATGAAATTGAATACACTTCTGTATTTAT
GGCATATTTTTTCTTTAACT

Product: phage integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MQVKLVRFAFYQYAEGTVMSLTDTKAKNARPAEKAVKLTDGFGLYLLVYPNGSKYWQLGYRFTGKQKVFSIGVYPAVSLA
DARQNAKHDALYQLASTGYILAINEQR

Sequences:

>Translated_107_residues
MQVKLVRFAFYQYAEGTVMSLTDTKAKNARPAEKAVKLTDGFGLYLLVYPNGSKYWQLGYRFTGKQKVFSIGVYPAVSLA
DARQNAKHDALYQLASTGYILAINEQR
>Mature_107_residues
MQVKLVRFAFYQYAEGTVMSLTDTKAKNARPAEKAVKLTDGFGLYLLVYPNGSKYWQLGYRFTGKQKVFSIGVYPAVSLA
DARQNAKHDALYQLASTGYILAINEQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788690, Length=66, Percent_Identity=45.4545454545455, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI145693166, Length=73, Percent_Identity=46.5753424657534, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 12035; Mature: 12035

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVKLVRFAFYQYAEGTVMSLTDTKAKNARPAEKAVKLTDGFGLYLLVYPNGSKYWQLGY
CEEEEEEEEEEHHCCCEEEEEECCCCCCCCCCHHEEEEECCCEEEEEEEECCCCEEEEEE
RFTGKQKVFSIGVYPAVSLADARQNAKHDALYQLASTGYILAINEQR
EECCCCEEEEEECCCCEEEHHHHCCCCHHHHHHHHCCCEEEEEECCC
>Mature Secondary Structure
MQVKLVRFAFYQYAEGTVMSLTDTKAKNARPAEKAVKLTDGFGLYLLVYPNGSKYWQLGY
CEEEEEEEEEEHHCCCEEEEEECCCCCCCCCCHHEEEEECCCEEEEEEEECCCCEEEEEE
RFTGKQKVFSIGVYPAVSLADARQNAKHDALYQLASTGYILAINEQR
EECCCCEEEEEECCCCEEEHHHHCCCCHHHHHHHHCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]