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The map label for this gene is hcpA [H]

Identifier: 218549315

GI number: 218549315

Start: 2028690

End: 2029271

Strand: Direct

Name: hcpA [H]

Synonym: EFER_1977

Alternate gene names: 218549315

Gene position: 2028690-2029271 (Clockwise)

Preceding gene: 218549294

Following gene: 218549316

Centisome position: 44.21

GC content: 50.17

Gene sequence:

>582_bases
TTGCCGAAAATAACCGGCAGGCAATTTATATTAATAGTCAACACCTTTACAAGGAATTCACAAATGCCAACTCCGTGTTA
CATCTCTATTACTGGTCAAACCCAGGGGAATATTACCGCAGGTGCTTTTACCGCTGATTCCGTCGGTAATATCTATGTGC
AGGGTCACGAAGACGAAATGCTGGTTCAGGAGTTCCTGCATAACGTCACCGTCCCGACTGATCCGCAATCCGGTCAACCT
GCGGGTCAGCGCGCCCACAAACCGTTCATCTTTACCGTGGCGTTGAACAAAGCTGTTCCGCTGATGTACAACGCACTGGC
CTCAGGCGAAATGCTACCAACCACAGAGTTGCACTGGTGGCGTACCTCTGTTGAAGGTAAACAAGAGCATTATTTCACCA
CCCGTCTGACGGATTCGACGATTGTGGATATGAAACTTCATATGCCGCATTGCCAGGACCCGGCAAAACGCGAGTTCACC
CAGTTGCTCGAAGTGTCTCTTGCCTACCGTAAAATCGAGTGGGAACACGTCAAGTCTGGCACATCTGGGGCTGATGACTG
GCGCGCACCTTTGGAAGCATAA

Upstream 100 bases:

>100_bases
TATTCAAATTTCTTTTACGAATACCAAATAACAGATCTATTGATCATCTGAATACTTAATAATGACGCGACTCTTAGTAT
AAAGTCGTATCGTTATCCGT

Downstream 100 bases:

>100_bases
ATTAAACCAACAGCATTCTGCCCTGCCGGGCGGAGTGCTGTTTTTTTTGCATCAAATTCAAGCGAAGTCGAAAAAAAATC
TTTTTAAGCAAATGGTTATG

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MPKITGRQFILIVNTFTRNSQMPTPCYISITGQTQGNITAGAFTADSVGNIYVQGHEDEMLVQEFLHNVTVPTDPQSGQP
AGQRAHKPFIFTVALNKAVPLMYNALASGEMLPTTELHWWRTSVEGKQEHYFTTRLTDSTIVDMKLHMPHCQDPAKREFT
QLLEVSLAYRKIEWEHVKSGTSGADDWRAPLEA

Sequences:

>Translated_193_residues
MPKITGRQFILIVNTFTRNSQMPTPCYISITGQTQGNITAGAFTADSVGNIYVQGHEDEMLVQEFLHNVTVPTDPQSGQP
AGQRAHKPFIFTVALNKAVPLMYNALASGEMLPTTELHWWRTSVEGKQEHYFTTRLTDSTIVDMKLHMPHCQDPAKREFT
QLLEVSLAYRKIEWEHVKSGTSGADDWRAPLEA
>Mature_192_residues
PKITGRQFILIVNTFTRNSQMPTPCYISITGQTQGNITAGAFTADSVGNIYVQGHEDEMLVQEFLHNVTVPTDPQSGQPA
GQRAHKPFIFTVALNKAVPLMYNALASGEMLPTTELHWWRTSVEGKQEHYFTTRLTDSTIVDMKLHMPHCQDPAKREFTQ
LLEVSLAYRKIEWEHVKSGTSGADDWRAPLEA

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 21703; Mature: 21572

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKITGRQFILIVNTFTRNSQMPTPCYISITGQTQGNITAGAFTADSVGNIYVQGHEDEM
CCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEECEEECCCCCEEEEECCCCHH
LVQEFLHNVTVPTDPQSGQPAGQRAHKPFIFTVALNKAVPLMYNALASGEMLPTTELHWW
HHHHHHHHCCCCCCCCCCCCCCHHCCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCEEEE
RTSVEGKQEHYFTTRLTDSTIVDMKLHMPHCQDPAKREFTQLLEVSLAYRKIEWEHVKSG
ECCCCCCCCEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
TSGADDWRAPLEA
CCCCCCCCCCCCC
>Mature Secondary Structure 
PKITGRQFILIVNTFTRNSQMPTPCYISITGQTQGNITAGAFTADSVGNIYVQGHEDEM
CCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCEEECEEECCCCCEEEEECCCCHH
LVQEFLHNVTVPTDPQSGQPAGQRAHKPFIFTVALNKAVPLMYNALASGEMLPTTELHWW
HHHHHHHHCCCCCCCCCCCCCCHHCCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCEEEE
RTSVEGKQEHYFTTRLTDSTIVDMKLHMPHCQDPAKREFTQLLEVSLAYRKIEWEHVKSG
ECCCCCCCCEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
TSGADDWRAPLEA
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]