Click here to switch to the map view.

The map label for this gene is yjdL [H]

Identifier: 218549239

GI number: 218549239

Start: 1942576

End: 1944033

Strand: Reverse

Name: yjdL [H]

Synonym: EFER_1899

Alternate gene names: 218549239

Gene position: 1944033-1942576 (Counterclockwise)

Preceding gene: 218549240

Following gene: 218549238

Centisome position: 42.37

GC content: 51.92

Gene sequence:

>1458_bases
ATGAAAACACCCTCACAGCCGCGCGCGATATACTATATCGTGGCGATCCAAATCTGGGAGTACTTCAGTTTTTACGGCAT
GCGTGCCTTACTCATTCTCTATCTCACCCATCAGCTTGGTTTTGATGATAACCATGCCATCAGCCTGTTCAGCGCATATG
CATCTCTGGTTTACGTTACCCCTATTCTCGGCGGCTGGCTTGCCGACCGCCTGCTCGGCAATCGTACTGCGGTAATTGCC
GGCGCGTTGTTAATGACCCTTGGCCATGTGGTGCTGGGCTTCGATTCGAATTCAACGTTTAGTCTGTATCTGGCGCTGGC
AATCATTATTTGTGGTTACGGTTTATTTAAATCAAATATCAGTTGTTTGCTTGGTGAGCTCTACGACGAGGATGATCATC
GGCGTGATGGCGGTTTTTCGCTGCTCTATGCCGCGGGCAATATCGGCTCTATCGCCGCGCCGATTGCTTGCGGTCTGGCT
GCGCAGTGGTATGGCTGGCATGTTGGCTTTGCCCTGGCGGGTGGGGGAATGTTTATCGGCTTGTTAATTTTCTTAAGTGG
CCATCGTCATTTCCAGACTACCCGCGGTATCGATAAAAAAGCGCTCGCCACCGTGAAGTTTGCCTTACCGGTATGGGGCT
GGTTGGTGGTGATGCTCTGTATTGCCCCGGTCTTTTTTACCCTGTTGCTGGAGAATAACTGGTCAGGCTATTTACTGGCG
ATCGTTTGCCTTATTGCCGCACAAATCATTGCCCGCATGATGATCAAATTCCCCGAACACCGCCGTGCTCTTTGGCAAAT
TGTATTGTTGATGTTCGTCGGGACATTGTTCTGGGTACTGGCACAACAGGGCGGCAGTACCATCAGCTTGTTTATCGATC
GCTTTGTGAATCGTCAGGCATTCAATATTGAAGTACCTACAGCACTATTCCAGTCGGTGAATGCGATTGCGGTGATGCTT
GCAGGGGTTGTACTCGCCTGGCTGGCGTCGCCAGAAAGCCGCGGCAATTCAGCATTGCGCGTCTGGCTGAAGTTTGCCTT
TGGCTTACTGCTGATGGCTTGTGGCTTTATGTTGCTGGCATTTGATGCCCGACATGCAGCGGCTGGCGGTCAAGCGTCAA
TGGGCGTGATGATATCCGGGCTGGCGCTAATGGGCTTTGCTGAACTCTTTATTGACCCGGTGGCGATTGCGCAAATCACG
CGTCTGAAAATGTCTGGCGTATTAACCGGTATTTATATGCTGGCAACAGGCGCGGTTGCCAACTGGCTGGCAGGCGTCGT
GGCACAGCAGACGACAGAGTCGCAAATTAACGGCATGGCGATTGCGGCGTATCAGCGGTTCTTTTCCCAAATGGGGGAGT
GGACGTTGGGTTGTGTCGCGATCATTGTGGTATTGGCCTTTGCTACCCGGATGTTGTTTAGCACATCAACCAATGTGGCC
CAGACATCTCGCGACTAA

Upstream 100 bases:

>100_bases
CGCTATACCGTTAAGGTATTGAAAGAAGAAAACAAAAAATAATTAGTTAGTACAAGGGAAGTGGCTTGCCACTTCCCTTT
TTCGCTCGTAAGGAGAACAC

Downstream 100 bases:

>100_bases
CAGTTTGAAAATTGGGGTGAAAAATGTGATTTCACCCCGGAGATAATGGTGGTGATGAATCGGAATTTGTCAGGCTGATG
ACCTGATAAATCAGAATTTG

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDNHAISLFSAYASLVYVTPILGGWLADRLLGNRTAVIA
GALLMTLGHVVLGFDSNSTFSLYLALAIIICGYGLFKSNISCLLGELYDEDDHRRDGGFSLLYAAGNIGSIAAPIACGLA
AQWYGWHVGFALAGGGMFIGLLIFLSGHRHFQTTRGIDKKALATVKFALPVWGWLVVMLCIAPVFFTLLLENNWSGYLLA
IVCLIAAQIIARMMIKFPEHRRALWQIVLLMFVGTLFWVLAQQGGSTISLFIDRFVNRQAFNIEVPTALFQSVNAIAVML
AGVVLAWLASPESRGNSALRVWLKFAFGLLLMACGFMLLAFDARHAAAGGQASMGVMISGLALMGFAELFIDPVAIAQIT
RLKMSGVLTGIYMLATGAVANWLAGVVAQQTTESQINGMAIAAYQRFFSQMGEWTLGCVAIIVVLAFATRMLFSTSTNVA
QTSRD

Sequences:

>Translated_485_residues
MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDNHAISLFSAYASLVYVTPILGGWLADRLLGNRTAVIA
GALLMTLGHVVLGFDSNSTFSLYLALAIIICGYGLFKSNISCLLGELYDEDDHRRDGGFSLLYAAGNIGSIAAPIACGLA
AQWYGWHVGFALAGGGMFIGLLIFLSGHRHFQTTRGIDKKALATVKFALPVWGWLVVMLCIAPVFFTLLLENNWSGYLLA
IVCLIAAQIIARMMIKFPEHRRALWQIVLLMFVGTLFWVLAQQGGSTISLFIDRFVNRQAFNIEVPTALFQSVNAIAVML
AGVVLAWLASPESRGNSALRVWLKFAFGLLLMACGFMLLAFDARHAAAGGQASMGVMISGLALMGFAELFIDPVAIAQIT
RLKMSGVLTGIYMLATGAVANWLAGVVAQQTTESQINGMAIAAYQRFFSQMGEWTLGCVAIIVVLAFATRMLFSTSTNVA
QTSRD
>Mature_485_residues
MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDNHAISLFSAYASLVYVTPILGGWLADRLLGNRTAVIA
GALLMTLGHVVLGFDSNSTFSLYLALAIIICGYGLFKSNISCLLGELYDEDDHRRDGGFSLLYAAGNIGSIAAPIACGLA
AQWYGWHVGFALAGGGMFIGLLIFLSGHRHFQTTRGIDKKALATVKFALPVWGWLVVMLCIAPVFFTLLLENNWSGYLLA
IVCLIAAQIIARMMIKFPEHRRALWQIVLLMFVGTLFWVLAQQGGSTISLFIDRFVNRQAFNIEVPTALFQSVNAIAVML
AGVVLAWLASPESRGNSALRVWLKFAFGLLLMACGFMLLAFDARHAAAGGQASMGVMISGLALMGFAELFIDPVAIAQIT
RLKMSGVLTGIYMLATGAVANWLAGVVAQQTTESQINGMAIAAYQRFFSQMGEWTLGCVAIIVVLAFATRMLFSTSTNVA
QTSRD

Specific function: Probable proton-dependent permease that transports di- and tripeptides. Shows significantly higher specificity towards dipeptides [H]

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI4827008, Length=232, Percent_Identity=28.0172413793103, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI226371746, Length=199, Percent_Identity=32.1608040201005, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI226371748, Length=191, Percent_Identity=29.3193717277487, Blast_Score=70, Evalue=5e-12,
Organism=Escherichia coli, GI1790572, Length=485, Percent_Identity=95.6701030927835, Blast_Score=938, Evalue=0.0,
Organism=Escherichia coli, GI1786927, Length=474, Percent_Identity=57.5949367088608, Blast_Score=534, Evalue=1e-153,
Organism=Escherichia coli, GI1787922, Length=474, Percent_Identity=29.3248945147679, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1789911, Length=485, Percent_Identity=27.8350515463918, Blast_Score=164, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI71987453, Length=186, Percent_Identity=29.0322580645161, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17569141, Length=385, Percent_Identity=23.1168831168831, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24639583, Length=297, Percent_Identity=25.5892255892256, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24639585, Length=297, Percent_Identity=25.5892255892256, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24639581, Length=297, Percent_Identity=25.5892255892256, Blast_Score=82, Evalue=9e-16,
Organism=Drosophila melanogaster, GI28571098, Length=154, Percent_Identity=30.5194805194805, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571102, Length=202, Percent_Identity=25.7425742574257, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571100, Length=202, Percent_Identity=25.7425742574257, Blast_Score=72, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 52834; Mature: 52834

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS50850 MFS ; PS01022 PTR2_1 ; PS01023 PTR2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDNHAISLFSAYASLVYVT
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
PILGGWLADRLLGNRTAVIAGALLMTLGHVVLGFDSNSTFSLYLALAIIICGYGLFKSNI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
SCLLGELYDEDDHRRDGGFSLLYAAGNIGSIAAPIACGLAAQWYGWHVGFALAGGGMFIG
HHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LLIFLSGHRHFQTTRGIDKKALATVKFALPVWGWLVVMLCIAPVFFTLLLENNWSGYLLA
HHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IVCLIAAQIIARMMIKFPEHRRALWQIVLLMFVGTLFWVLAQQGGSTISLFIDRFVNRQA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCE
FNIEVPTALFQSVNAIAVMLAGVVLAWLASPESRGNSALRVWLKFAFGLLLMACGFMLLA
EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FDARHAAAGGQASMGVMISGLALMGFAELFIDPVAIAQITRLKMSGVLTGIYMLATGAVA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NWLAGVVAQQTTESQINGMAIAAYQRFFSQMGEWTLGCVAIIVVLAFATRMLFSTSTNVA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
QTSRD
HCCCC
>Mature Secondary Structure
MKTPSQPRAIYYIVAIQIWEYFSFYGMRALLILYLTHQLGFDDNHAISLFSAYASLVYVT
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
PILGGWLADRLLGNRTAVIAGALLMTLGHVVLGFDSNSTFSLYLALAIIICGYGLFKSNI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
SCLLGELYDEDDHRRDGGFSLLYAAGNIGSIAAPIACGLAAQWYGWHVGFALAGGGMFIG
HHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LLIFLSGHRHFQTTRGIDKKALATVKFALPVWGWLVVMLCIAPVFFTLLLENNWSGYLLA
HHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IVCLIAAQIIARMMIKFPEHRRALWQIVLLMFVGTLFWVLAQQGGSTISLFIDRFVNRQA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCE
FNIEVPTALFQSVNAIAVMLAGVVLAWLASPESRGNSALRVWLKFAFGLLLMACGFMLLA
EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FDARHAAAGGQASMGVMISGLALMGFAELFIDPVAIAQITRLKMSGVLTGIYMLATGAVA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NWLAGVVAQQTTESQINGMAIAAYQRFFSQMGEWTLGCVAIIVVLAFATRMLFSTSTNVA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
QTSRD
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]