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The map label for this gene is ycfJ [H]

Identifier: 218549164

GI number: 218549164

Start: 1873068

End: 1873607

Strand: Reverse

Name: ycfJ [H]

Synonym: EFER_1818

Alternate gene names: 218549164

Gene position: 1873607-1873068 (Counterclockwise)

Preceding gene: 218549165

Following gene: 218549163

Centisome position: 40.83

GC content: 48.52

Gene sequence:

>540_bases
GTGAATAAATCAATGTTGGCGGGGATAGGGATTGGCGTAGTTGCTGCGCTGGGCGTGGCGGCGGTAGCCAGTCTTAATGT
CTTTGAGCGTGGCCCGCAATATGCACAGGTTGTTTCTGCCACTCCTATTAAGGAGACGATTAAAACCCCGCGTCAGGAGT
GCCGAAATGTGACGGTCACCCATCGGCGTCCTGTTCAGGATGAAAATCGTATCGCAGGTTCAGTGTTGGGGGCTGTCGCA
GGTGGCGTTATTGGTCATCAATTTGGCGGTGGGCGAGGTAAAGATGTCGCGACTGTTGTCGGAGCATTAGGTGGGGGATA
TGCCGGAAACCAAATTCAGGGATCATTACAGAATAGTGATACTTACACCACCACCCAACAGCGCTGTAAAACGGTTTATG
ACAAATCGGAAAAAATGCTCGGTTATGACGTGACCTATAAAATAGGTGATCAGCAGGGCAAAATTCGCATGGATAAAGAT
CCTGGCAGCCAAATTCCACTCGATAGTAACGGACAGTTAATTTTGACTAACAAAGTATAA

Upstream 100 bases:

>100_bases
GGGTGATTTTAACCAGCTCATCTTTTTTCATCCTCTGTCTCATTGGCTTCTGTTATTTCTGGTTGCAATATTGTTACAAC
CAGAAAATAGGAGGTATCCC

Downstream 100 bases:

>100_bases
AAAAGCTGTACTCTGCAATTTGGCCCCTCATTCGCTCAGGCTGAGGGGCTTTTTTTCATCCCTTTTCCTGGAGTGTCTAT
ACTTCCTGCTACGTATTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MNKSMLAGIGIGVVAALGVAAVASLNVFERGPQYAQVVSATPIKETIKTPRQECRNVTVTHRRPVQDENRIAGSVLGAVA
GGVIGHQFGGGRGKDVATVVGALGGGYAGNQIQGSLQNSDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDKD
PGSQIPLDSNGQLILTNKV

Sequences:

>Translated_179_residues
MNKSMLAGIGIGVVAALGVAAVASLNVFERGPQYAQVVSATPIKETIKTPRQECRNVTVTHRRPVQDENRIAGSVLGAVA
GGVIGHQFGGGRGKDVATVVGALGGGYAGNQIQGSLQNSDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDKD
PGSQIPLDSNGQLILTNKV
>Mature_179_residues
MNKSMLAGIGIGVVAALGVAAVASLNVFERGPQYAQVVSATPIKETIKTPRQECRNVTVTHRRPVQDENRIAGSVLGAVA
GGVIGHQFGGGRGKDVATVVGALGGGYAGNQIQGSLQNSDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDKD
PGSQIPLDSNGQLILTNKV

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=179, Percent_Identity=96.0893854748603, Blast_Score=328, Evalue=1e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 18863; Mature: 18863

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSMLAGIGIGVVAALGVAAVASLNVFERGPQYAQVVSATPIKETIKTPRQECRNVTVT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHCCCEEE
HRRPVQDENRIAGSVLGAVAGGVIGHQFGGGRGKDVATVVGALGGGYAGNQIQGSLQNSD
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCCCC
TYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDKDPGSQIPLDSNGQLILTNKV
CCHHHHHHHHHHHHCCCCEECEEEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MNKSMLAGIGIGVVAALGVAAVASLNVFERGPQYAQVVSATPIKETIKTPRQECRNVTVT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHCCCEEE
HRRPVQDENRIAGSVLGAVAGGVIGHQFGGGRGKDVATVVGALGGGYAGNQIQGSLQNSD
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCCCC
TYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDKDPGSQIPLDSNGQLILTNKV
CCHHHHHHHHHHHHCCCCEECEEEEEEECCCCCCEEECCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]