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The map label for this gene is ybjS [H]

Identifier: 218549079

GI number: 218549079

Start: 1777705

End: 1778721

Strand: Reverse

Name: ybjS [H]

Synonym: EFER_1731

Alternate gene names: 218549079

Gene position: 1778721-1777705 (Counterclockwise)

Preceding gene: 218549080

Following gene: 218549078

Centisome position: 38.76

GC content: 53.98

Gene sequence:

>1017_bases
GTGAAAATCCTCGTGACGGGGGCGACCAGCGGCCTCGGGCGAAATGCTGTGCAATCTTTGTTGCAATCGGGAGTGTCGGT
TGTGGCAACAGGGCGCAATCGCGAGGTTGGTAAAAGCCTGATAAGCGCAGGCGCGCAGTTTGTGGCTCTCGATTTAACCG
AGGTAACTGAGGATGACTGCGCCCGTTTGATGGATGGCTGCGATGCCGTCTGGCACTGTGCGGCAAAGTCCTCACCCTGG
GGAGACAAAACGGCGTTCTGGCTTGCCAATGTCAAAGCAACCCATACTCTGGCACAGGCGGCAGGCAGGCTGAATATTCC
CCGGTTTATCCATATCTCCACGCCTGCGGTTTACTTTGATTTTCAACACCACTACGACCTGCCAGAAACCTGGCTTGCGC
GCTCTTTCTCAAGCCATTACGCGAGCAGTAAATATGCCGCTGAGCAGGTTATTGCCGGGGCTGTAGCGCAATATCCTGCC
ACGAGGTTTATCCTTTTGCGCCCCCGTGGACTTTTTGGTCCCCATGACAATGTGATCGTTCCCCGTCTGATGCAGCAATT
GCAACAGGACGGCGGTTGCTTACGTTTGCCGCGCGGGGGCGAAGCGTTACTGGATCTCACTTTCGTGCAAAACGTGGTGT
ATGCCATGCAACTGGCAACGCAGGTTGAAGGATTACGCTCGGGCAGTATTTACAACATCAGCAATCATCAGCCGCAGAAA
TTATCTGTAATGCTTGACGCCTTGCTGCGCCAGCAATTGGGATTGAGCTACCGAATTGCTACCGTTCCGTGGCCGTTGCT
TTCTCTGGTCGCACGCGGCCTGGAGCTGTACGGGAAGTGCGTTAATCAGGAACCCGTTATCACACGTTACAGCGCCGGAA
CACTCTGTTTTGATATGACGCTGAGTGCGCAAAAGGCCATTACAGAGCTGGGCTATCACCCGCGCTTTTCGATGGAGCAA
GGTATTGCAATCACGGGACAATGGCTGAGGGAACATGGCAAAAATAACCGTATTTGA

Upstream 100 bases:

>100_bases
TGCATGAAGCGGTGATTAGCGGTCGTTTCACTAAGGATAAGCCTGCGATGTTGATTGGCACGGCGGCGGGATTAACGCTG
GCAGGTATGGTGCTTTTACC

Downstream 100 bases:

>100_bases
AACGGGCTGGTGTACCCATATTGGCTGCATTGCGCTAAAAGGGGCAGGGCTGAAAGTGTGTAAGTTCCCTGCCCGCGCCT
GGCTGCTGGAAGTGGGCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKILVTGATSGLGRNAVQSLLQSGVSVVATGRNREVGKSLISAGAQFVALDLTEVTEDDCARLMDGCDAVWHCAAKSSPW
GDKTAFWLANVKATHTLAQAAGRLNIPRFIHISTPAVYFDFQHHYDLPETWLARSFSSHYASSKYAAEQVIAGAVAQYPA
TRFILLRPRGLFGPHDNVIVPRLMQQLQQDGGCLRLPRGGEALLDLTFVQNVVYAMQLATQVEGLRSGSIYNISNHQPQK
LSVMLDALLRQQLGLSYRIATVPWPLLSLVARGLELYGKCVNQEPVITRYSAGTLCFDMTLSAQKAITELGYHPRFSMEQ
GIAITGQWLREHGKNNRI

Sequences:

>Translated_338_residues
MKILVTGATSGLGRNAVQSLLQSGVSVVATGRNREVGKSLISAGAQFVALDLTEVTEDDCARLMDGCDAVWHCAAKSSPW
GDKTAFWLANVKATHTLAQAAGRLNIPRFIHISTPAVYFDFQHHYDLPETWLARSFSSHYASSKYAAEQVIAGAVAQYPA
TRFILLRPRGLFGPHDNVIVPRLMQQLQQDGGCLRLPRGGEALLDLTFVQNVVYAMQLATQVEGLRSGSIYNISNHQPQK
LSVMLDALLRQQLGLSYRIATVPWPLLSLVARGLELYGKCVNQEPVITRYSAGTLCFDMTLSAQKAITELGYHPRFSMEQ
GIAITGQWLREHGKNNRI
>Mature_338_residues
MKILVTGATSGLGRNAVQSLLQSGVSVVATGRNREVGKSLISAGAQFVALDLTEVTEDDCARLMDGCDAVWHCAAKSSPW
GDKTAFWLANVKATHTLAQAAGRLNIPRFIHISTPAVYFDFQHHYDLPETWLARSFSSHYASSKYAAEQVIAGAVAQYPA
TRFILLRPRGLFGPHDNVIVPRLMQQLQQDGGCLRLPRGGEALLDLTFVQNVVYAMQLATQVEGLRSGSIYNISNHQPQK
LSVMLDALLRQQLGLSYRIATVPWPLLSLVARGLELYGKCVNQEPVITRYSAGTLCFDMTLSAQKAITELGYHPRFSMEQ
GIAITGQWLREHGKNNRI

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=345, Percent_Identity=24.9275362318841, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI8393516, Length=345, Percent_Identity=24.9275362318841, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI116268111, Length=356, Percent_Identity=25.2808988764045, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI239745448, Length=372, Percent_Identity=25.8064516129032, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI310132178, Length=372, Percent_Identity=25.5376344086022, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI310113012, Length=372, Percent_Identity=25.5376344086022, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI87081792, Length=336, Percent_Identity=46.1309523809524, Blast_Score=313, Evalue=1e-86,
Organism=Caenorhabditis elegans, GI17509709, Length=359, Percent_Identity=24.5125348189415, Blast_Score=72, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6321437, Length=297, Percent_Identity=25.2525252525253, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 37167; Mature: 37167

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILVTGATSGLGRNAVQSLLQSGVSVVATGRNREVGKSLISAGAQFVALDLTEVTEDDC
CEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCEEEEEHHHCCHHHH
ARLMDGCDAVWHCAAKSSPWGDKTAFWLANVKATHTLAQAAGRLNIPRFIHISTPAVYFD
HHHHHCCHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCEEEEE
FQHHYDLPETWLARSFSSHYASSKYAAEQVIAGAVAQYPATRFILLRPRGLFGPHDNVIV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEH
PRLMQQLQQDGGCLRLPRGGEALLDLTFVQNVVYAMQLATQVEGLRSGSIYNISNHQPQK
HHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHH
LSVMLDALLRQQLGLSYRIATVPWPLLSLVARGLELYGKCVNQEPVITRYSAGTLCFDMT
HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEH
LSAQKAITELGYHPRFSMEQGIAITGQWLREHGKNNRI
HHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHCCCCCCC
>Mature Secondary Structure
MKILVTGATSGLGRNAVQSLLQSGVSVVATGRNREVGKSLISAGAQFVALDLTEVTEDDC
CEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCEEEEEHHHCCHHHH
ARLMDGCDAVWHCAAKSSPWGDKTAFWLANVKATHTLAQAAGRLNIPRFIHISTPAVYFD
HHHHHCCHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCEEEEE
FQHHYDLPETWLARSFSSHYASSKYAAEQVIAGAVAQYPATRFILLRPRGLFGPHDNVIV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEH
PRLMQQLQQDGGCLRLPRGGEALLDLTFVQNVVYAMQLATQVEGLRSGSIYNISNHQPQK
HHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHH
LSVMLDALLRQQLGLSYRIATVPWPLLSLVARGLELYGKCVNQEPVITRYSAGTLCFDMT
HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEH
LSAQKAITELGYHPRFSMEQGIAITGQWLREHGKNNRI
HHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]