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The map label for this gene is rssA [H]

Identifier: 218549071

GI number: 218549071

Start: 1769913

End: 1770851

Strand: Reverse

Name: rssA [H]

Synonym: EFER_1721

Alternate gene names: 218549071

Gene position: 1770851-1769913 (Counterclockwise)

Preceding gene: 218549074

Following gene: 218549070

Centisome position: 38.59

GC content: 48.46

Gene sequence:

>939_bases
ATGTCTGCAGACCAGGGGAAGTTCGTCGGTACAATGAGAAAGATAAAAATAGGCCTGGCACTGGGGTCCGGTGCTGCACG
CGGTTGGTCACATATTGGTGTGATAAAAGCGCTAAAACAAATAGGTATTGAAATTGATATTGTTGCCGGATGCTCCATAG
GTTCATTAGTGGGAGCTGCTTACGCCTGTAATAAATTATCTGACCTGGAAAACTGGGTGAGCTCGTTTAGTTACTGGGAA
GTATTGCGACTGATGGATCTCTCCTGGCGACGAGGCGGTTTGTTACGGGGCGAACGCGTTTTTAATTACTATCGTAATAT
TATGCCTATCGCAGAAATAGAAAATTGCACACGGCGTTTTGGTGCAGTTGCGACTAATCTGAGTACCGGCAGGGAGTTAT
GGTTTACCGAAGGCGATCTTCATCTGGCAGTGCGTGCATCCTGCAGTATCCCTGGGTTGATGGCGCCAGTTGCGCACAAC
GGCTATTGGTTAGTCGATGGGGCAGTGGTTAATCCGGTGCCTGTTTCACTGACCAGAGCGATGGGCGCTGATATTGTTAT
AGCAGTTGATTTACAGCATGATGCACATCTGATGCAACAAGATCTCCTTTCGTTAAATGTGAGTGAAGATATCAGTGATA
GCGAAGATTCGCTTCCCTGGCATCAACGCCTGAAAGAGCGGCTAAGTAATATTACGACTCGTCGGGTTGTCACTGCGCCA
ACGGCAATGGAGATAATGACCACCTCCATTCAGGTTCTGGAGAACCGTCTCAAACGCAACCGTATGGCTGGCGATCCACC
TGATATTCTGATCCAGCCTTTCTGTCCACAAATCTCAACGTTGGATTTCCATCGTGCCAGTTCTGCCATTGTGGCAGGGC
AACTCGCGGTAGAAAAAAAACTCGATGAGCTTTCACCGCTTGTGCGAGCCAACGGTTGA

Upstream 100 bases:

>100_bases
CAGGGACAAAGTTGAGACACAAATCATCTCCCTGAAATAAAAAAGTGGCGTATGGACGCCCTGGGTAGCGCTATGTTAAC
TGAGCAGTGGCAATGTTGCT

Downstream 100 bases:

>100_bases
CGCACATTTTTATCTACACTTAAGTTAATTCTGACAGGCGCATGTGGCGATACCGTGCCACTATTGTTTAAAGCCAGTCA
GGGGGGAGAATATGACGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MSADQGKFVGTMRKIKIGLALGSGAARGWSHIGVIKALKQIGIEIDIVAGCSIGSLVGAAYACNKLSDLENWVSSFSYWE
VLRLMDLSWRRGGLLRGERVFNYYRNIMPIAEIENCTRRFGAVATNLSTGRELWFTEGDLHLAVRASCSIPGLMAPVAHN
GYWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLLSLNVSEDISDSEDSLPWHQRLKERLSNITTRRVVTAP
TAMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRASSAIVAGQLAVEKKLDELSPLVRANG

Sequences:

>Translated_312_residues
MSADQGKFVGTMRKIKIGLALGSGAARGWSHIGVIKALKQIGIEIDIVAGCSIGSLVGAAYACNKLSDLENWVSSFSYWE
VLRLMDLSWRRGGLLRGERVFNYYRNIMPIAEIENCTRRFGAVATNLSTGRELWFTEGDLHLAVRASCSIPGLMAPVAHN
GYWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLLSLNVSEDISDSEDSLPWHQRLKERLSNITTRRVVTAP
TAMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRASSAIVAGQLAVEKKLDELSPLVRANG
>Mature_311_residues
SADQGKFVGTMRKIKIGLALGSGAARGWSHIGVIKALKQIGIEIDIVAGCSIGSLVGAAYACNKLSDLENWVSSFSYWEV
LRLMDLSWRRGGLLRGERVFNYYRNIMPIAEIENCTRRFGAVATNLSTGRELWFTEGDLHLAVRASCSIPGLMAPVAHNG
YWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLLSLNVSEDISDSEDSLPWHQRLKERLSNITTRRVVTAPT
AMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRASSAIVAGQLAVEKKLDELSPLVRANG

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656037, Length=183, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI260656043, Length=183, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI260656041, Length=183, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI260656039, Length=183, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI116256487, Length=183, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI148727290, Length=182, Percent_Identity=32.4175824175824, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI148727335, Length=182, Percent_Identity=32.4175824175824, Blast_Score=96, Evalue=6e-20,
Organism=Escherichia coli, GI226510936, Length=300, Percent_Identity=87, Blast_Score=547, Evalue=1e-157,
Organism=Caenorhabditis elegans, GI193204778, Length=184, Percent_Identity=33.1521739130435, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71997289, Length=167, Percent_Identity=32.3353293413174, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI71997299, Length=167, Percent_Identity=32.3353293413174, Blast_Score=77, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323581, Length=181, Percent_Identity=34.8066298342541, Blast_Score=97, Evalue=3e-21,
Organism=Drosophila melanogaster, GI28571388, Length=219, Percent_Identity=29.2237442922374, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281376913, Length=219, Percent_Identity=29.2237442922374, Blast_Score=82, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 34248; Mature: 34117

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS01237 UPF0028

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADQGKFVGTMRKIKIGLALGSGAARGWSHIGVIKALKQIGIEIDIVAGCSIGSLVGAA
CCCCCCHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHH
YACNKLSDLENWVSSFSYWEVLRLMDLSWRRGGLLRGERVFNYYRNIMPIAEIENCTRRF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
GAVATNLSTGRELWFTEGDLHLAVRASCSIPGLMAPVAHNGYWLVDGAVVNPVPVSLTRA
HHHHHCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHCCCCEEEECCCEECCCCHHHHHH
MGADIVIAVDLQHDAHLMQQDLLSLNVSEDISDSEDSLPWHQRLKERLSNITTRRVVTAP
CCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECC
TAMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRASSAIVAGQLAVEKK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHH
LDELSPLVRANG
HHHHHHHHHCCC
>Mature Secondary Structure 
SADQGKFVGTMRKIKIGLALGSGAARGWSHIGVIKALKQIGIEIDIVAGCSIGSLVGAA
CCCCCHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHH
YACNKLSDLENWVSSFSYWEVLRLMDLSWRRGGLLRGERVFNYYRNIMPIAEIENCTRRF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
GAVATNLSTGRELWFTEGDLHLAVRASCSIPGLMAPVAHNGYWLVDGAVVNPVPVSLTRA
HHHHHCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHCCCCEEEECCCEECCCCHHHHHH
MGADIVIAVDLQHDAHLMQQDLLSLNVSEDISDSEDSLPWHQRLKERLSNITTRRVVTAP
CCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECC
TAMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRASSAIVAGQLAVEKK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHH
LDELSPLVRANG
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]