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The map label for this gene is ydeA

Identifier: 218548902

GI number: 218548902

Start: 1579313

End: 1580506

Strand: Reverse

Name: ydeA

Synonym: EFER_1547

Alternate gene names: 218548902

Gene position: 1580506-1579313 (Counterclockwise)

Preceding gene: 218548903

Following gene: 218548900

Centisome position: 34.44

GC content: 49.25

Gene sequence:

>1194_bases
ATGACAACGAACACGGTTACCCGCAAGGTCGCGTGGCTACGGGTCGTTACGCTGGCAATAGCGGCTTTTATCTTTAATAC
CACTGAATTTGTGCCAGTCGGTTTGCTTTCGGATATCGCGGCAAGCTTCCATATGGAAACAGCACAAACAGGCATTATGT
TGACGATTTACGCCTGGGTGGTCGCGTTAATGTCGCTGCCTTTTATGCTGCTCACCAGTCAGGTTGAACGACGAAGATTA
CTGATCTGTCTGTTCGTGTTGTTTATTGCCAGTCACATTTTGTCTTTTATGGCATGGAGTTTTACCGTACTGGTCATTAG
CCGAATTGGTGTTGCTTTTGCACATGCCATTTTTTGGTCAATTACAGCATCGCTGGCGATCCGTCTCGCTCCTGCCGGAA
AACGCGCTCAGGCATTAAGCCTGTTAGCCACGGGTACAGCACTGGCGATGGTTCTTGGTCTGCCTGTGGGTCGTATTGTC
GGGCAGTATTTCGGCTGGCGAACAACCTTCCTGGCAATTGGTGTTGGTGCCTTCCTGACGCTACTGTGCCTGATTAAGTT
ATTACCCTTGTTGCCCAGTGAGCATTCAGGTTCGCTGAAAAGCCTGCCCGTACTGTTTCGACGTCCGGCATTAATGAGCA
TTTATCTGCTGACGGTTGTGGTGGTAACAGCTCACTATACGGCTTACAGCTATATCGAACCGTTTGTGCAAAATATTGCC
GGATTAAGCGCCAACTTTGCCACTGTACTGTTACTGATCCTGGGGGGCGCGGGAATTATCGGCAGCGTGATTTTCGGTAA
ACTCGGCAATAACCATGCCTCAGTGCTGGTGAGTGTCGCTATTGCATTGTTAATGGCGTGCCTGCTTCTGTTAATGCCTG
CCTCAGTGAGTGAAACTCATCTGGCAATATTAAGTATCTTCTGGGGAATCGCCATCATGATGATTGGCCTTGGGATGCAG
GTAAAAGTGCTGGCATTAGCGCCGGATGCTACTGATGTCGCCATGTCGTTGTTTTCCGGTATTTTTAATATCGGTATTGG
TGCAGGAGCGTTAGTAGGGAATCAGGTAAGCCTGCACTGGTCAATGGCCGATATTGGCTATGTCGGTGCGATCCCGGCGT
TTTTAGCTTTGGTATGGTCAGTGATTATTTTTCGTCGCTGGCCGGTGGTGCTGGAAGAACAACCACAACACTGA

Upstream 100 bases:

>100_bases
AGAGATTAATGCGATCTTCATCACAAATTTATTGTCTTTCGCCTTGCTATCGCTTTAAGATCGTCGCCTCACCTTTTCGC
TACTAATCTTATACATTCTT

Downstream 100 bases:

>100_bases
GTTATAAAGCCGGATCGTGCATCCGGCTTTATTCTTAATGATACGTTTTAATAATTTCCAACACGCCATTGATAATAAAC
TGTACGCCCATACACACCAG

Product: sugar efflux transporter

Products: arabinose [Periplasm]; Proton [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MTTNTVTRKVAWLRVVTLAIAAFIFNTTEFVPVGLLSDIAASFHMETAQTGIMLTIYAWVVALMSLPFMLLTSQVERRRL
LICLFVLFIASHILSFMAWSFTVLVISRIGVAFAHAIFWSITASLAIRLAPAGKRAQALSLLATGTALAMVLGLPVGRIV
GQYFGWRTTFLAIGVGAFLTLLCLIKLLPLLPSEHSGSLKSLPVLFRRPALMSIYLLTVVVVTAHYTAYSYIEPFVQNIA
GLSANFATVLLLILGGAGIIGSVIFGKLGNNHASVLVSVAIALLMACLLLLMPASVSETHLAILSIFWGIAIMMIGLGMQ
VKVLALAPDATDVAMSLFSGIFNIGIGAGALVGNQVSLHWSMADIGYVGAIPAFLALVWSVIIFRRWPVVLEEQPQH

Sequences:

>Translated_397_residues
MTTNTVTRKVAWLRVVTLAIAAFIFNTTEFVPVGLLSDIAASFHMETAQTGIMLTIYAWVVALMSLPFMLLTSQVERRRL
LICLFVLFIASHILSFMAWSFTVLVISRIGVAFAHAIFWSITASLAIRLAPAGKRAQALSLLATGTALAMVLGLPVGRIV
GQYFGWRTTFLAIGVGAFLTLLCLIKLLPLLPSEHSGSLKSLPVLFRRPALMSIYLLTVVVVTAHYTAYSYIEPFVQNIA
GLSANFATVLLLILGGAGIIGSVIFGKLGNNHASVLVSVAIALLMACLLLLMPASVSETHLAILSIFWGIAIMMIGLGMQ
VKVLALAPDATDVAMSLFSGIFNIGIGAGALVGNQVSLHWSMADIGYVGAIPAFLALVWSVIIFRRWPVVLEEQPQH
>Mature_396_residues
TTNTVTRKVAWLRVVTLAIAAFIFNTTEFVPVGLLSDIAASFHMETAQTGIMLTIYAWVVALMSLPFMLLTSQVERRRLL
ICLFVLFIASHILSFMAWSFTVLVISRIGVAFAHAIFWSITASLAIRLAPAGKRAQALSLLATGTALAMVLGLPVGRIVG
QYFGWRTTFLAIGVGAFLTLLCLIKLLPLLPSEHSGSLKSLPVLFRRPALMSIYLLTVVVVTAHYTAYSYIEPFVQNIAG
LSANFATVLLLILGGAGIIGSVIFGKLGNNHASVLVSVAIALLMACLLLLMPASVSETHLAILSIFWGIAIMMIGLGMQV
KVLALAPDATDVAMSLFSGIFNIGIGAGALVGNQVSLHWSMADIGYVGAIPAFLALVWSVIIFRRWPVVLEEQPQH

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family

Homologues:

Organism=Escherichia coli, GI1787808, Length=396, Percent_Identity=88.1313131313131, Blast_Score=630, Evalue=0.0,
Organism=Escherichia coli, GI1787947, Length=330, Percent_Identity=32.1212121212121, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI145693198, Length=370, Percent_Identity=28.9189189189189, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786595, Length=342, Percent_Identity=22.8070175438596, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SOTB_ESCF3 (B7LRC4)

Other databases:

- EMBL:   CU928158
- RefSeq:   YP_002382693.1
- EnsemblBacteria:   EBESCT00000123480
- GeneID:   7123833
- GenomeReviews:   CU928158_GR
- KEGG:   efe:EFER_1547
- GeneTree:   EBGT00050000008819
- HOGENOM:   HBG732715
- ProtClustDB:   PRK03545
- BioCyc:   EFER585054:EFER_1547-MONOMER
- HAMAP:   MF_00517
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196

Pfam domain/function: PF07690 MFS_1; SSF103473 MFS_gen_substrate_transporter

EC number: NA

Molecular weight: Translated: 42653; Mature: 42522

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x286efdc0)-; HASH(0x29422e24)-; HASH(0x28e52c0c)-; HASH(0x293275e0)-; HASH(0x1f6673d4)-; HASH(0x27f8c080)-; HASH(0x29232ec0)-; HASH(0x294230ac)-; HASH(0x27dd70ec)-; HASH(0x2929f2a8)-; HASH(0x293254b8)-; HASH(0x2942f5c8)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTNTVTRKVAWLRVVTLAIAAFIFNTTEFVPVGLLSDIAASFHMETAQTGIMLTIYAWV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VALMSLPFMLLTSQVERRRLLICLFVLFIASHILSFMAWSFTVLVISRIGVAFAHAIFWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITASLAIRLAPAGKRAQALSLLATGTALAMVLGLPVGRIVGQYFGWRTTFLAIGVGAFLT
HHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLCLIKLLPLLPSEHSGSLKSLPVLFRRPALMSIYLLTVVVVTAHYTAYSYIEPFVQNIA
HHHHHHHHHCCCCCCCCCCHHCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLSANFATVLLLILGGAGIIGSVIFGKLGNNHASVLVSVAIALLMACLLLLMPASVSETH
CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LAILSIFWGIAIMMIGLGMQVKVLALAPDATDVAMSLFSGIFNIGIGAGALVGNQVSLHW
HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEE
SMADIGYVGAIPAFLALVWSVIIFRRWPVVLEEQPQH
EHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
>Mature Secondary Structure 
TTNTVTRKVAWLRVVTLAIAAFIFNTTEFVPVGLLSDIAASFHMETAQTGIMLTIYAWV
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VALMSLPFMLLTSQVERRRLLICLFVLFIASHILSFMAWSFTVLVISRIGVAFAHAIFWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ITASLAIRLAPAGKRAQALSLLATGTALAMVLGLPVGRIVGQYFGWRTTFLAIGVGAFLT
HHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLCLIKLLPLLPSEHSGSLKSLPVLFRRPALMSIYLLTVVVVTAHYTAYSYIEPFVQNIA
HHHHHHHHHCCCCCCCCCCHHCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLSANFATVLLLILGGAGIIGSVIFGKLGNNHASVLVSVAIALLMACLLLLMPASVSETH
CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LAILSIFWGIAIMMIGLGMQVKVLALAPDATDVAMSLFSGIFNIGIGAGALVGNQVSLHW
HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEE
SMADIGYVGAIPAFLALVWSVIIFRRWPVVLEEQPQH
EHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: arabinose [Cytoplasm]; Proton [Periplasm] [C]

Specific reaction: arabinose [Cytoplasm] + Proton [Periplasm] = arabinose [Periplasm] + Proton [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA