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The map label for this gene is sdiA [H]

Identifier: 218548547

GI number: 218548547

Start: 1217653

End: 1218408

Strand: Direct

Name: sdiA [H]

Synonym: EFER_1178

Alternate gene names: 218548547

Gene position: 1217653-1218408 (Clockwise)

Preceding gene: 218548546

Following gene: 218548549

Centisome position: 26.54

GC content: 45.77

Gene sequence:

>756_bases
ATGAGTTTAGCGCCATGGGATATTGCAATTTGTATGCATGATATTGAATTTTTCACCTGGCGACGGACTATGCTGTCACG
CTTTCAGGAAATGGCTTCCGCTGAAGATGTTTTTCAGGAATTACAATTTCAAACACAAAAACTGGAATTTGATTATTATT
CTTTGTGTGTCCGTCATCCCGTCCCGTTTACAAGGCCCAAAGTGGCGTATTATTCAACTTATCCTGAAGCCTGGGTGTCT
TATTACCAGCAGCACAACTTTTTAGCGATCGATCCCGTCTTAAAGCCAGAAAACTTTAGTCAGGGCCATCTGTTGTGGGA
TGACGCATTGTTTAGCGAAGCACAACCACTGTGGGATGCGGCGCGGGCGCATGGGTTGCGTAGAGGGGTAACGCAATACT
TGATGTTGTCTAATAGAGCGCTTGGTTTTCTTTCGCTTTCCCGCATGAGTGCTCGTGAAGGGCCAATTGCCCATGATGAA
CTGGAGTTGAAACTGCAACTTCTGGTACGTGAAAGTCTTAATGTTCTGGCACGATTGCAACACGAGATGGTGATGACGCC
CGCGATGCGTTTTAGTAAACGGGAAACTGAAATCCTGCGCTGGACAGCAGAAGGGAAGACCTCAGCAGAGATCGCCATGA
TTTTGTCGATATCAGAAAATACCGTCAATTTTCATCAAAAGAATATGCAGAAAAAATTCAATGCCCCCAATAAAACGCAG
GTGGCCTGTTATGCGGCGGCAACGGGGATAATCTGA

Upstream 100 bases:

>100_bases
AATTAGTAGGAAAAGTTGCTGAAACTAATTAAACCGTCAACGAAGTGATTATTTTTTTATATAAAATATGTTTATGTGAT
AGTTTATTTCATCCGTATAA

Downstream 100 bases:

>100_bases
AGGGAAAACCGTTCTGTGTGAAAAAGGCAAAAACCGGCTGAAAGTCAGGCTTTCAGCCGGTTTTTGTTTACTGGCGGTAA
GCCTGTTTAATTTGCTTAAC

Product: DNA-binding transcriptional activator SdiA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MSLAPWDIAICMHDIEFFTWRRTMLSRFQEMASAEDVFQELQFQTQKLEFDYYSLCVRHPVPFTRPKVAYYSTYPEAWVS
YYQQHNFLAIDPVLKPENFSQGHLLWDDALFSEAQPLWDAARAHGLRRGVTQYLMLSNRALGFLSLSRMSAREGPIAHDE
LELKLQLLVRESLNVLARLQHEMVMTPAMRFSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQ
VACYAAATGII

Sequences:

>Translated_251_residues
MSLAPWDIAICMHDIEFFTWRRTMLSRFQEMASAEDVFQELQFQTQKLEFDYYSLCVRHPVPFTRPKVAYYSTYPEAWVS
YYQQHNFLAIDPVLKPENFSQGHLLWDDALFSEAQPLWDAARAHGLRRGVTQYLMLSNRALGFLSLSRMSAREGPIAHDE
LELKLQLLVRESLNVLARLQHEMVMTPAMRFSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQ
VACYAAATGII
>Mature_250_residues
SLAPWDIAICMHDIEFFTWRRTMLSRFQEMASAEDVFQELQFQTQKLEFDYYSLCVRHPVPFTRPKVAYYSTYPEAWVSY
YQQHNFLAIDPVLKPENFSQGHLLWDDALFSEAQPLWDAARAHGLRRGVTQYLMLSNRALGFLSLSRMSAREGPIAHDEL
ELKLQLLVRESLNVLARLQHEMVMTPAMRFSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQV
ACYAAATGII

Specific function: Activates cell division by specifically increasing transcription from one of the two promoters that lie immediately upstream of the ftsQAZ gene cluster. Activates ydiV expression in response to extracellular autoinducer AI-1 (Vibrio fischeri autoinducer o

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=240, Percent_Identity=80.8333333333333, Blast_Score=413, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 29133; Mature: 29002

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAPWDIAICMHDIEFFTWRRTMLSRFQEMASAEDVFQELQFQTQKLEFDYYSLCVRHP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
VPFTRPKVAYYSTYPEAWVSYYQQHNFLAIDPVLKPENFSQGHLLWDDALFSEAQPLWDA
CCCCCCCEEEEECCHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEHHHHHHCCCHHHHH
ARAHGLRRGVTQYLMLSNRALGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARLQ
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
HEMVMTPAMRFSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQ
HHHHHHHHHHHCCCCHHEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCE
VACYAAATGII
EEEEEHHCCCC
>Mature Secondary Structure 
SLAPWDIAICMHDIEFFTWRRTMLSRFQEMASAEDVFQELQFQTQKLEFDYYSLCVRHP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
VPFTRPKVAYYSTYPEAWVSYYQQHNFLAIDPVLKPENFSQGHLLWDDALFSEAQPLWDA
CCCCCCCEEEEECCHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEHHHHHHCCCHHHHH
ARAHGLRRGVTQYLMLSNRALGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARLQ
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
HEMVMTPAMRFSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQ
HHHHHHHHHHHCCCCHHEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCE
VACYAAATGII
EEEEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3515318; 9097040; 9278503; 1915297 [H]