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The map label for this gene is yecS [H]

Identifier: 218548545

GI number: 218548545

Start: 1216041

End: 1216709

Strand: Direct

Name: yecS [H]

Synonym: EFER_1176

Alternate gene names: 218548545

Gene position: 1216041-1216709 (Clockwise)

Preceding gene: 218548544

Following gene: 218548546

Centisome position: 26.5

GC content: 49.33

Gene sequence:

>669_bases
ATGCAAGAAAGTATTGATTTAGTAATTGAATCCTTGCCATATCTACTCAAAGGTGCGGTCTTTACTCTGCAATTAAGTAT
TGGCGGGATGTTTTTTGGGCTGCTGCTTGGGTTTATTCTTGCGTTAATGCGGCTTTCTCCGGTTGGGCCACTGCGCTGGC
TGGCACGGTTTTATATCTCGATTTTTCGTGGCACGCCGCTTATTGCACAGCTATTTATGATCTATTACGGTTTGCCGCAG
TTTGGTATTGAACTCGATCCGGTGCCGTCGGCAATGATTGGTTTGTCATTAAACACGGCGGCATATGCTGCCGAGACTTT
ACGGGCAGCTATTTCTTCTATTGATAAAGGGCAGTGGGAAGCGGCAGCCAGTATTGGTATGACGCCCTGGCAAACGATGC
GCCGGGCAATTTTGCCCCAGGCAGCACGTGTGGCATTACCCCCACTGAGCAACAGTTTTATCAGTCTGGTGAAAGACACT
TCGCTGGCGGCGACGATTCAGGTGCCAGAGTTGTTCCGTCAGGCACAGTTGATCACCTCGCGTACGCTGGAAGTGTTCAC
GATGTATCTGGCGGCCTCCCTGATTTACTGGATCATGGCAACAGTGCTTTCTACCCTGCAAAACTATTTCGAAAATCAAC
TTAACCGCCAGGAGAGAGAGCCGAAATGA

Upstream 100 bases:

>100_bases
GAAACGCTTTAAAGATCAGGGCCCGATTCTGTTTATTCATACTGGTGGGGCGCCTGCGCTTTTCGCCTATCATCCGCACG
TATAACTTTCGGAACTGCTC

Downstream 100 bases:

>100_bases
GTGCGATAGAAGTTAAAAACCTGGTAAAAAAATTCCATGGTCAAACTGTATTACACGGGATTGATTTGGCGGTGAAAACC
GGGGAAGTGGTGGCGATTAT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MQESIDLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFILALMRLSPVGPLRWLARFYISIFRGTPLIAQLFMIYYGLPQ
FGIELDPVPSAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNYFENQLNRQEREPK

Sequences:

>Translated_222_residues
MQESIDLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFILALMRLSPVGPLRWLARFYISIFRGTPLIAQLFMIYYGLPQ
FGIELDPVPSAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNYFENQLNRQEREPK
>Mature_222_residues
MQESIDLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFILALMRLSPVGPLRWLARFYISIFRGTPLIAQLFMIYYGLPQ
FGIELDPVPSAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNYFENQLNRQEREPK

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=222, Percent_Identity=95.4954954954955, Blast_Score=424, Evalue=1e-120,
Organism=Escherichia coli, GI1786873, Length=214, Percent_Identity=38.3177570093458, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1787030, Length=217, Percent_Identity=35.0230414746544, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1787086, Length=221, Percent_Identity=34.3891402714932, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI87082239, Length=211, Percent_Identity=37.4407582938389, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787087, Length=232, Percent_Identity=29.7413793103448, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1788645, Length=203, Percent_Identity=34.4827586206897, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786874, Length=198, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788646, Length=210, Percent_Identity=29.0476190476191, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI48994930, Length=171, Percent_Identity=35.0877192982456, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24728; Mature: 24728

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQESIDLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFILALMRLSPVGPLRWLARFYIS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IFRGTPLIAQLFMIYYGLPQFGIELDPVPSAMIGLSLNTAAYAAETLRAAISSIDKGQWE
HHCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHH
AAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITS
HHHHCCCCHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHCHHHHEEHHHHHHHHHHHHHH
RTLEVFTMYLAASLIYWIMATVLSTLQNYFENQLNRQEREPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQESIDLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFILALMRLSPVGPLRWLARFYIS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IFRGTPLIAQLFMIYYGLPQFGIELDPVPSAMIGLSLNTAAYAAETLRAAISSIDKGQWE
HHCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHH
AAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITS
HHHHCCCCHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHCHHHHEEHHHHHHHHHHHHHH
RTLEVFTMYLAASLIYWIMATVLSTLQNYFENQLNRQEREPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]