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The map label for this gene is yfbE

Identifier: 218548297

GI number: 218548297

Start: 932218

End: 933357

Strand: Reverse

Name: yfbE

Synonym: EFER_0916

Alternate gene names: 218548297

Gene position: 933357-932218 (Counterclockwise)

Preceding gene: 218548299

Following gene: 218548296

Centisome position: 20.34

GC content: 50.18

Gene sequence:

>1140_bases
ATGTCGAACTTTTTGCCTTTTTCACGCCCGGCCATGGGCGCGGAAGAACTTGCTGCAGTTAAAGAGGTTCTCGAATCCGG
ATGGATTACTACCGGGCCGAAAAATCTGGCACTGGAAGATGCCTTTATTCAGTTGACGGGTAATCAGTATGCAATTGCCG
TGAGTTCAGCAACTGCTGGCATGCATATCACATTGATGGCATTAGAAATTGGTCCTGGCGATGAAGTTATCACCCCGTCC
ATGACCTGGGTTTCGACCCTTAATATGATTTCTCTGTTGGGCGCAACACCCGTTATGGTGGATGTGGATCGCGACACTCT
GATGGTTACTCCAGAAATTGTCGAGGCAGCCATAACTCCACGCACAAAAGCGATTATTCCTGTGCATTATGCCGGGGCCC
CGGCAGATACCAACGCTCTCTATGCTATTGCCGAACGCCATGGTATTGCGGTTATTGAAGACGCCGCTCATGCCGTTGGT
ACGTATTACAAAGGTCAGCACGTCGGGGCACGGGGCACCGCTATCTTCTCTTTTCACGCTATAAAAAATATTACCTGTGC
AGAAGGCGGTTTGGTGGTCACCGATGACGAAAGCCTCGCTCGCCAATTGCGTACGCTTAAATTTCATGGACTGGGTGTCG
ATGCCTACGACCGACAGACCTGGGGGCGAGCGCCACAAGCTGAAGTTCTGACGCCGGGATACAAATACAATCTGACGGAT
ATCAATGCCGCTATCGCCCTGACACAGCTGCATAAACTTGAGCAACTCAATGCTCGCCGTCACGATATCGCTACTCAGTA
CCAGCACGCTTTGGTGAATTTACCTTTCCAACCCCTGGCGCTTCCGGCGTGGCCACATATCCATTCCTGGCATCTTTTCA
TTATTCGTGTCGATGAACAACGTTGCGGCATTAATCGCGATACTTTAATGGAAGCGCTAAAAGAAAAAGGTATTGGCACC
GGACTTCATTTTCGCGCCGCTCACACGCAAAAGTATTATCGCCAACATTTTCCTGATCTGTCGCTACCCAATACGGAATG
GAATAGCGAACGCATCTGCTCGTTGCCACTTTTCCCGGATATGACGAACGCAGATGCTGAACGCGTCATTACTGCCCTTC
ACCAACTCGCAGGACAATAA

Upstream 100 bases:

>100_bases
TCCAGGCATATTCTGGTAATGCAAATAATATATCCCTGAAACATCCCTATGCTTATTTAAATAATAATAGGGTGTTAGTG
TCATGGCTTAAGGACAATGA

Downstream 100 bases:

>100_bases
ACGATGTTTGAAATCCACCCTATTAAGAAAGTCTCGGTGGTTATTCCTGTTTATAACGAGCAGGAAAGCTTACCGGAATT
GATTAATCGCACCACAGCGG

Product: UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase

Products: NA

Alternate protein names: UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase; UDP-4-amino-4-deoxy-L-arabinose aminotransferase

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MSNFLPFSRPAMGAEELAAVKEVLESGWITTGPKNLALEDAFIQLTGNQYAIAVSSATAGMHITLMALEIGPGDEVITPS
MTWVSTLNMISLLGATPVMVDVDRDTLMVTPEIVEAAITPRTKAIIPVHYAGAPADTNALYAIAERHGIAVIEDAAHAVG
TYYKGQHVGARGTAIFSFHAIKNITCAEGGLVVTDDESLARQLRTLKFHGLGVDAYDRQTWGRAPQAEVLTPGYKYNLTD
INAAIALTQLHKLEQLNARRHDIATQYQHALVNLPFQPLALPAWPHIHSWHLFIIRVDEQRCGINRDTLMEALKEKGIGT
GLHFRAAHTQKYYRQHFPDLSLPNTEWNSERICSLPLFPDMTNADAERVITALHQLAGQ

Sequences:

>Translated_379_residues
MSNFLPFSRPAMGAEELAAVKEVLESGWITTGPKNLALEDAFIQLTGNQYAIAVSSATAGMHITLMALEIGPGDEVITPS
MTWVSTLNMISLLGATPVMVDVDRDTLMVTPEIVEAAITPRTKAIIPVHYAGAPADTNALYAIAERHGIAVIEDAAHAVG
TYYKGQHVGARGTAIFSFHAIKNITCAEGGLVVTDDESLARQLRTLKFHGLGVDAYDRQTWGRAPQAEVLTPGYKYNLTD
INAAIALTQLHKLEQLNARRHDIATQYQHALVNLPFQPLALPAWPHIHSWHLFIIRVDEQRCGINRDTLMEALKEKGIGT
GLHFRAAHTQKYYRQHFPDLSLPNTEWNSERICSLPLFPDMTNADAERVITALHQLAGQ
>Mature_378_residues
SNFLPFSRPAMGAEELAAVKEVLESGWITTGPKNLALEDAFIQLTGNQYAIAVSSATAGMHITLMALEIGPGDEVITPSM
TWVSTLNMISLLGATPVMVDVDRDTLMVTPEIVEAAITPRTKAIIPVHYAGAPADTNALYAIAERHGIAVIEDAAHAVGT
YYKGQHVGARGTAIFSFHAIKNITCAEGGLVVTDDESLARQLRTLKFHGLGVDAYDRQTWGRAPQAEVLTPGYKYNLTDI
NAAIALTQLHKLEQLNARRHDIATQYQHALVNLPFQPLALPAWPHIHSWHLFIIRVDEQRCGINRDTLMEALKEKGIGTG
LHFRAAHTQKYYRQHFPDLSLPNTEWNSERICSLPLFPDMTNADAERVITALHQLAGQ

Specific function: Catalyzes the conversion of UDP-4-keto-arabinose (UDP- Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family. ArnB subfamily

Homologues:

Organism=Escherichia coli, GI145693159, Length=379, Percent_Identity=87.598944591029, Blast_Score=679, Evalue=0.0,
Organism=Escherichia coli, GI2367285, Length=377, Percent_Identity=31.5649867374005, Blast_Score=166, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARNB_ESCF3 (B7LM78)

Other databases:

- EMBL:   CU928158
- RefSeq:   YP_002382088.1
- ProteinModelPortal:   B7LM78
- EnsemblBacteria:   EBESCT00000124517
- GeneID:   7123052
- GenomeReviews:   CU928158_GR
- KEGG:   efe:EFER_0916
- GeneTree:   EBGT00050000010722
- HOGENOM:   HBG660897
- ProtClustDB:   PRK11658
- BioCyc:   EFER585054:EFER_0916-MONOMER
- HAMAP:   MF_01167
- InterPro:   IPR022850
- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- Gene3D:   G3DSA:3.40.640.10
- Gene3D:   G3DSA:3.90.1150.10
- PIRSF:   PIRSF000390

Pfam domain/function: PF01041 DegT_DnrJ_EryC1; SSF53383 PyrdxlP-dep_Trfase_major

EC number: =2.6.1.87

Molecular weight: Translated: 41624; Mature: 41493

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNFLPFSRPAMGAEELAAVKEVLESGWITTGPKNLALEDAFIQLTGNQYAIAVSSATAG
CCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCEEEEEEEEEECCEEEEEEECCCCC
MHITLMALEIGPGDEVITPSMTWVSTLNMISLLGATPVMVDVDRDTLMVTPEIVEAAITP
EEEEEEEEEECCCCCEECCCHHHHHHHHHHHHHCCCCEEEECCCCEEEECHHHHHHHCCC
RTKAIIPVHYAGAPADTNALYAIAERHGIAVIEDAAHAVGTYYKGQHVGARGTAIFSFHA
CCEEEEEEEECCCCCCCCCEEEEEHHCCEEEEEHHHHHHHCCCCCCCCCCCCEEEEEEHH
IKNITCAEGGLVVTDDESLARQLRTLKFHGLGVDAYDRQTWGRAPQAEVLTPGYKYNLTD
HCCCEECCCCEEEECCHHHHHHHHHHEEECCCCCCCCCHHCCCCCCCCEECCCCEEEECH
INAAIALTQLHKLEQLNARRHDIATQYQHALVNLPFQPLALPAWPHIHSWHLFIIRVDEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECHH
RCGINRDTLMEALKEKGIGTGLHFRAAHTQKYYRQHFPDLSLPNTEWNSERICSLPLFPD
HCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
MTNADAERVITALHQLAGQ
CCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNFLPFSRPAMGAEELAAVKEVLESGWITTGPKNLALEDAFIQLTGNQYAIAVSSATAG
CCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCEEEEEEEEEECCEEEEEEECCCCC
MHITLMALEIGPGDEVITPSMTWVSTLNMISLLGATPVMVDVDRDTLMVTPEIVEAAITP
EEEEEEEEEECCCCCEECCCHHHHHHHHHHHHHCCCCEEEECCCCEEEECHHHHHHHCCC
RTKAIIPVHYAGAPADTNALYAIAERHGIAVIEDAAHAVGTYYKGQHVGARGTAIFSFHA
CCEEEEEEEECCCCCCCCCEEEEEHHCCEEEEEHHHHHHHCCCCCCCCCCCCEEEEEEHH
IKNITCAEGGLVVTDDESLARQLRTLKFHGLGVDAYDRQTWGRAPQAEVLTPGYKYNLTD
HCCCEECCCCEEEECCHHHHHHHHHHEEECCCCCCCCCHHCCCCCCCCEECCCCEEEECH
INAAIALTQLHKLEQLNARRHDIATQYQHALVNLPFQPLALPAWPHIHSWHLFIIRVDEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECHH
RCGINRDTLMEALKEKGIGTGLHFRAAHTQKYYRQHFPDLSLPNTEWNSERICSLPLFPD
HCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
MTNADAERVITALHQLAGQ
CCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA