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The map label for this gene is gerKA [H]

Identifier: 218234703

GI number: 218234703

Start: 662616

End: 664118

Strand: Reverse

Name: gerKA [H]

Synonym: BCB4264_A0671

Alternate gene names: 218234703

Gene position: 664118-662616 (Counterclockwise)

Preceding gene: 218231818

Following gene: 218232384

Centisome position: 12.26

GC content: 36.33

Gene sequence:

>1503_bases
ATGACAGAGAAAAAAGAACAACAAGAGAGTAAAAAACAAAAGCATATGTTTCCATCACTTCCGGAGAACATTAGTTACAT
TGAAAATAAACTTTCTCATTCTGATGATATAAAAAAATTAGATCTCCCTTTTCAAAACGGAAAAGGAATAATCTTATATA
TCGAATCTTTAGCAGATCCAAATCTAATTCATCAGTTAGCTCTTGAGCCTTTATTGACACGGTCAGACTTAGCTATAGAT
AAAGCTTTTTCTACATTAAATATGAAAAAAGAAACGAATTTAAATTATGGTGTGCAGCTTTTATTACAAGGTAAATCCTT
ATATTTTCATGAACACGTCGACAGTTTTTGTATTTTCGAAACAGCTCTATCCTTAAAGAGAGATATAGCAGAACCTGATA
ATGAAGGAATTGTCCGTGGACCACATACTGGTTTTGTAGAAGACTTAGCAACCAATTTAGCTTCCATTCGCAAACTCATA
AAAAGTCCACATGTCGTCATTAAATATTTCACACTTGGTGAAGAAATGCATACGAAAGTGGCAATTGCTTATATGCAAAA
CATAGCGAATGACGATTTAGTTACAGAGGTAAAAAGAAGGTTAGAAACGATTAAGACAGATGCACTTATGCCTCCAGGAT
ATATACAAGAATTTATAGAGGATACGTCTTTCTCACCATTTCCGCAGCAATTAAATACAGAGCGTCCAGATAGAGTCGCA
GCAAATTTAATGGAAGGACGAGTTGCTATTTTATCTGATGGAGATCCAACAGCTCTTATCGTTCCTGTTACATTATTTGC
TTTTTACCAATCACCAGATGACTATAATAACCGCTGGATTGTTGGTTCTTTCGTCCGAATGATTCGCCTAGTAAGCTTCT
TGATTGCCTTTCTCTTACCAGCTATATATATCGCAACCGTAGCCTTCCATCCTGATGTATTGCCGCTCGAACTTGTGTAT
ACAATTAAAGCTTCATTAGAGAAAGTACCACTTCCTCCTATTTTTGAAGCTCTCTTAATGGAATTAATCTTTGAATTATT
ACGGGAAGCTGGTATTCGCTTACCAAGCCGAGTTGGACAAACAATCGGTATTGTAGGTGGTTTAGTAATTGGTGATGCGA
TTGTAAAAGCCGGACTCGTTTCTTACACAATGATTATCGTTGTAGCTTTAACTGCAATCTCATCTTTTCTCGTTCCATCA
AACGATATGAGTTCAGCAGTTCGAATTCTTCGTTTTCCATTAATGATTCTTGCTGCTATATTCGGATACGTCGGAATATC
ATTCGGTCTCATTATAACTTTCGTTCATTTATGTCAATTACATTCATTTCATACGCCATATCTTTCTCCTGTTGCCCCGA
TGCGGATAAAAGATATGAAAGATTCTTTTGTAAGACTTCCAATTTGGTCGTTTTGGGAACGACCACATGATCCAAAACCG
AAAAAAATGCAACGACAACATGTAACGAGAGAGGATGAGGACGGTGACAAACACGCAAAGTAA

Upstream 100 bases:

>100_bases
GTAACCTTCAACCCTCTTTTTAAAAAATAATTCAAGCATAAATTTCTCACAAACGACAAAAATTAACAGAAACAATTGCA
CTTTAAAAGAGGTGGAAATT

Downstream 100 bases:

>100_bases
AATTTCGCTCGTTCAATTTACCTTTTTCGTTATTCAATGCCAAATCGGAGTTGGTATCCTTTCTCTACCTAACCGTCTTC
ACCCGATAGCAAAAGGTGGC

Product: spore germination protein GerKA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 499

Protein sequence:

>500_residues
MTEKKEQQESKKQKHMFPSLPENISYIENKLSHSDDIKKLDLPFQNGKGIILYIESLADPNLIHQLALEPLLTRSDLAID
KAFSTLNMKKETNLNYGVQLLLQGKSLYFHEHVDSFCIFETALSLKRDIAEPDNEGIVRGPHTGFVEDLATNLASIRKLI
KSPHVVIKYFTLGEEMHTKVAIAYMQNIANDDLVTEVKRRLETIKTDALMPPGYIQEFIEDTSFSPFPQQLNTERPDRVA
ANLMEGRVAILSDGDPTALIVPVTLFAFYQSPDDYNNRWIVGSFVRMIRLVSFLIAFLLPAIYIATVAFHPDVLPLELVY
TIKASLEKVPLPPIFEALLMELIFELLREAGIRLPSRVGQTIGIVGGLVIGDAIVKAGLVSYTMIIVVALTAISSFLVPS
NDMSSAVRILRFPLMILAAIFGYVGISFGLIITFVHLCQLHSFHTPYLSPVAPMRIKDMKDSFVRLPIWSFWERPHDPKP
KKMQRQHVTREDEDGDKHAK

Sequences:

>Translated_500_residues
MTEKKEQQESKKQKHMFPSLPENISYIENKLSHSDDIKKLDLPFQNGKGIILYIESLADPNLIHQLALEPLLTRSDLAID
KAFSTLNMKKETNLNYGVQLLLQGKSLYFHEHVDSFCIFETALSLKRDIAEPDNEGIVRGPHTGFVEDLATNLASIRKLI
KSPHVVIKYFTLGEEMHTKVAIAYMQNIANDDLVTEVKRRLETIKTDALMPPGYIQEFIEDTSFSPFPQQLNTERPDRVA
ANLMEGRVAILSDGDPTALIVPVTLFAFYQSPDDYNNRWIVGSFVRMIRLVSFLIAFLLPAIYIATVAFHPDVLPLELVY
TIKASLEKVPLPPIFEALLMELIFELLREAGIRLPSRVGQTIGIVGGLVIGDAIVKAGLVSYTMIIVVALTAISSFLVPS
NDMSSAVRILRFPLMILAAIFGYVGISFGLIITFVHLCQLHSFHTPYLSPVAPMRIKDMKDSFVRLPIWSFWERPHDPKP
KKMQRQHVTREDEDGDKHAK
>Mature_499_residues
TEKKEQQESKKQKHMFPSLPENISYIENKLSHSDDIKKLDLPFQNGKGIILYIESLADPNLIHQLALEPLLTRSDLAIDK
AFSTLNMKKETNLNYGVQLLLQGKSLYFHEHVDSFCIFETALSLKRDIAEPDNEGIVRGPHTGFVEDLATNLASIRKLIK
SPHVVIKYFTLGEEMHTKVAIAYMQNIANDDLVTEVKRRLETIKTDALMPPGYIQEFIEDTSFSPFPQQLNTERPDRVAA
NLMEGRVAILSDGDPTALIVPVTLFAFYQSPDDYNNRWIVGSFVRMIRLVSFLIAFLLPAIYIATVAFHPDVLPLELVYT
IKASLEKVPLPPIFEALLMELIFELLREAGIRLPSRVGQTIGIVGGLVIGDAIVKAGLVSYTMIIVVALTAISSFLVPSN
DMSSAVRILRFPLMILAAIFGYVGISFGLIITFVHLCQLHSFHTPYLSPVAPMRIKDMKDSFVRLPIWSFWERPHDPKPK
KMQRQHVTREDEDGDKHAK

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 56438; Mature: 56306

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKKEQQESKKQKHMFPSLPENISYIENKLSHSDDIKKLDLPFQNGKGIILYIESLADP
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCEEEEEECCCCCH
NLIHQLALEPLLTRSDLAIDKAFSTLNMKKETNLNYGVQLLLQGKSLYFHEHVDSFCIFE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHH
TALSLKRDIAEPDNEGIVRGPHTGFVEDLATNLASIRKLIKSPHVVIKYFTLGEEMHTKV
HHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH
AIAYMQNIANDDLVTEVKRRLETIKTDALMPPGYIQEFIEDTSFSPFPQQLNTERPDRVA
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHCCCCHHHHH
ANLMEGRVAILSDGDPTALIVPVTLFAFYQSPDDYNNRWIVGSFVRMIRLVSFLIAFLLP
HHHHCCCEEEEECCCCCEEEHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
AIYIATVAFHPDVLPLELVYTIKASLEKVPLPPIFEALLMELIFELLREAGIRLPSRVGQ
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TIGIVGGLVIGDAIVKAGLVSYTMIIVVALTAISSFLVPSNDMSSAVRILRFPLMILAAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FGYVGISFGLIITFVHLCQLHSFHTPYLSPVAPMRIKDMKDSFVRLPIWSFWERPHDPKP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCH
KKMQRQHVTREDEDGDKHAK
HHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TEKKEQQESKKQKHMFPSLPENISYIENKLSHSDDIKKLDLPFQNGKGIILYIESLADP
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCEEEEEECCCCCH
NLIHQLALEPLLTRSDLAIDKAFSTLNMKKETNLNYGVQLLLQGKSLYFHEHVDSFCIFE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHH
TALSLKRDIAEPDNEGIVRGPHTGFVEDLATNLASIRKLIKSPHVVIKYFTLGEEMHTKV
HHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH
AIAYMQNIANDDLVTEVKRRLETIKTDALMPPGYIQEFIEDTSFSPFPQQLNTERPDRVA
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHCCCCHHHHH
ANLMEGRVAILSDGDPTALIVPVTLFAFYQSPDDYNNRWIVGSFVRMIRLVSFLIAFLLP
HHHHCCCEEEEECCCCCEEEHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
AIYIATVAFHPDVLPLELVYTIKASLEKVPLPPIFEALLMELIFELLREAGIRLPSRVGQ
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TIGIVGGLVIGDAIVKAGLVSYTMIIVVALTAISSFLVPSNDMSSAVRILRFPLMILAAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FGYVGISFGLIITFVHLCQLHSFHTPYLSPVAPMRIKDMKDSFVRLPIWSFWERPHDPKP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCH
KKMQRQHVTREDEDGDKHAK
HHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]