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The map label for this gene is ydcA [H]

Identifier: 218231788

GI number: 218231788

Start: 235963

End: 236535

Strand: Reverse

Name: ydcA [H]

Synonym: BCB4264_A0264

Alternate gene names: 218231788

Gene position: 236535-235963 (Counterclockwise)

Preceding gene: 218234934

Following gene: 218235937

Centisome position: 4.36

GC content: 33.86

Gene sequence:

>573_bases
ATGCTAATAAGATCCACTCATATTTCTTTACAACCGACTATTCTTACCTTACTGCTTATTCATTTAGTCATGATGATATT
AGGCGACTTTTTTCTCTTACCACTGGCAGCCTCTAATGAATATATCGCGAAAGGAGAATGGTGGCGTGTCATAACTTCTC
TTCTCGTACACGTAGACTTACAACATTTTCTTTCTAATAGTATTTTTTTGTTTGCTCTTGGTTCTTCTATCGAAAAGCAA
CTCGGACACTTTTCTTTTTTTATTCTATTTTTTCTCTCTGGAATTTCTGGAAATATTTCTTCTTATATTATTATGCCGCT
TGAATATATTCACGCAGGTGCATCAGGTGGTATTTTCGGACTATTAGGTGCACAGTTATTTTTATTGTACAATCGATACC
GCTCTTCAAAACCAAAAGAAATTGCCATTTTCTCAATTATGATACTTCTATTACTGCTATTTACTTTCTTTAACCCTTCT
GCCAATCCGATCAGTCATTTAACAGGTTTAATAACCGGTGGCATTTTAACCCCTTTTTTAACAAAAAAAAACGATGGTGC
AAAGCTTATTTAA

Upstream 100 bases:

>100_bases
TAATCATTTCGAAATCCCCTTCTTCTATTTAACTTTCTTCTTTCATATTGATAAGAATAACAGAGAATCTTTCTGATGCA
AAAGGGGTGATAGTAACCGT

Downstream 100 bases:

>100_bases
TATAAAAGCTTGCACCATCGATAATTTCTACATCTACTTGTTCACTTAAATCTCTCATTAATTGAAATAAAGACTCATCC
TTCATCTTCGCCTCAATCAT

Product: rhomboid family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MLIRSTHISLQPTILTLLLIHLVMMILGDFFLLPLAASNEYIAKGEWWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQ
LGHFSFFILFFLSGISGNISSYIIMPLEYIHAGASGGIFGLLGAQLFLLYNRYRSSKPKEIAIFSIMILLLLLFTFFNPS
ANPISHLTGLITGGILTPFLTKKNDGAKLI

Sequences:

>Translated_190_residues
MLIRSTHISLQPTILTLLLIHLVMMILGDFFLLPLAASNEYIAKGEWWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQ
LGHFSFFILFFLSGISGNISSYIIMPLEYIHAGASGGIFGLLGAQLFLLYNRYRSSKPKEIAIFSIMILLLLLFTFFNPS
ANPISHLTGLITGGILTPFLTKKNDGAKLI
>Mature_190_residues
MLIRSTHISLQPTILTLLLIHLVMMILGDFFLLPLAASNEYIAKGEWWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQ
LGHFSFFILFFLSGISGNISSYIIMPLEYIHAGASGGIFGLLGAQLFLLYNRYRSSKPKEIAIFSIMILLLLLFTFFNPS
ANPISHLTGLITGGILTPFLTKKNDGAKLI

Specific function: Not Yet Known. [C]

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S54 family [H]

Homologues:

Organism=Homo sapiens, GI190341097, Length=133, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002610
- InterPro:   IPR022764 [H]

Pfam domain/function: PF01694 Rhomboid [H]

EC number: NA

Molecular weight: Translated: 21146; Mature: 21146

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIRSTHISLQPTILTLLLIHLVMMILGDFFLLPLAASNEYIAKGEWWRVITSLLVHVDL
CCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHH
QHFLSNSIFLFALGSSIEKQLGHFSFFILFFLSGISGNISSYIIMPLEYIHAGASGGIFG
HHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHCCCCCCHHH
LLGAQLFLLYNRYRSSKPKEIAIFSIMILLLLLFTFFNPSANPISHLTGLITGGILTPFL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TKKNDGAKLI
CCCCCCCCCC
>Mature Secondary Structure
MLIRSTHISLQPTILTLLLIHLVMMILGDFFLLPLAASNEYIAKGEWWRVITSLLVHVDL
CCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHH
QHFLSNSIFLFALGSSIEKQLGHFSFFILFFLSGISGNISSYIIMPLEYIHAGASGGIFG
HHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHCCCCCCHHH
LLGAQLFLLYNRYRSSKPKEIAIFSIMILLLLLFTFFNPSANPISHLTGLITGGILTPFL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
TKKNDGAKLI
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]