Click here to switch to the map view.

The map label for this gene is dppE [H]

Identifier: 218230899

GI number: 218230899

Start: 192387

End: 194027

Strand: Reverse

Name: dppE [H]

Synonym: BCB4264_A0220

Alternate gene names: 218230899

Gene position: 194027-192387 (Counterclockwise)

Preceding gene: 218233093

Following gene: 218231583

Centisome position: 3.58

GC content: 35.41

Gene sequence:

>1641_bases
ATGAAAAAGAAGTTTGTACCCGGTATTGCATCAGTTGTAGGAGTAAGTATTTTATTAACTGGTTGCGGTAGTTATAAAAA
CGAAGCAAGCGGAGCAAATGCAAAAGACGAGGCACCTAGTAAACAGGTTTTAAACTTATCTTCACCTACTGAAATACGAA
CAATGGATACGGCTCGTGCTACAGATACTGATTCTGGTCAAGTAATGAGAAACGTATTTGAAGGTTTGTATAATCTTGGT
GAAGGTAACAAACCTGTTCCTGGTGTTGCAAAATCTCATGAAGTAAGTGGCGATAAAACGAAATACACATTCCATTTGCG
AGATTCAAAATGGTCAAACGGCACTCCTGTTACAGCTAAAGATTTTGTGTTCGCTTGGCAACGTGCCGTAGATCCAGCAA
CAGCCTCTGAATATGCATTTTTATTCTTTGATATTAAAAACGCAACAAAAATTAACAACAAAGAACTTCCAGCCGACCAA
CTTGGTGTAAAAGCAGTTGATGACCATACGTTTGAGGTAGAATTAGAGCGTCCTGTTCCTTATTTTATTAGCTTAACAGC
GTTCCCAACATTTCTACCAATTAATGAGGAATTCTTTAAAGTACAAGGTGATAAGTACGCTTTAGAAGATAATACAATCT
TGTACAATGGAGCTTTTACACTAAGCGATTGGAAGCACGAACAAAGCTTTAAATTTAAGAAGAACCCTACCTATTGGGAT
AAAGATACTGTCAAACTAGAAGAAATCAATTTTAATGTCGTAAAAGAAAAATCAACAGAAGTAAATTTATTCGAGTCAAA
ACAATTAGATCGTATAAAACTAACATCTGACTTCGTCGATAAATATAAAAAGGATGCTAACTTTAAAGAACGTCCAAACG
TAGGCGTACAATTTTTACGTATGAATCAACAAAACAAAGTACTTCAAAACGTTTCTGCACGCCAAGCAATTGATCAAACA
ATTGATAGAAAATCCTTTGTAAATACGTTATTAAATGATGGCTCTACACCAACATTTGGTCTCGTTCCAAAAAACTTTGC
AAAAGGACCTGAAGGAAAAGACTTCCGTACTGCAAACGGCGATTTAACAAAAGTTGATACAAAATCTGCACAAGAGTTAT
GGAAAAAAGCTAAACAAGAGCTTGGTTCTGAAAAGATAACATTAGAATTATTAACGAGTGATGCTGACCTTGATAAGAAA
ACTGGTGAATTCTTAAAAGGACAACTAGAAAAGAATCTAGATGGATTAACAGTAAATATAAAACCTCAGCCGCGTAAGCA
ACAAGTTTCGCTTTTATTAAAAGGTGACTACGAAATCGGAATTGATGGCTGGAGCCCTGACTTTGCGGATCCAATTACAT
TCCTTGAGCTATTTACAACGAATAACCCTTATAACTTAGATCATTACTCTAATAAGGAATTCGATGAAACAATAGCAAAA
GTGAAAACAACTTTAGCTGGTGATGAAAAAGCTCGCTGGGAAGCATTACTAGCATCCGAGAAAATATTATTTAAAGACTC
TGTTATCGCTCCTCTTTACCAAAAAGGCGAATCTTATTTAGAACGTTCTTATGTGAAAGGAATTGTGCAAGTAGACTTTG
CAGGTCAATTAAACTTCAAGTGGGCAAAAATTGAAAAATAA

Upstream 100 bases:

>100_bases
TGTACGTAAAAATCCCTCTTTCTCAATATGAAAAGAGGGATTTTTTATTTTTCATTTCCCTCATCATCATCCAAACTTAA
TTATTTAGGAGGAAAATCAA

Downstream 100 bases:

>100_bases
AGTGAAACTTTAATAAGTGGGGGGTTTCTTCATCCCCACTTATTATTAGCCCACACCAATTGTTTTTTTAGCAAAATATA
TTAAAAATAGGTTCTCTCAC

Product: putative oligopeptide ABC transporter, oligopeptide-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 546

Protein sequence:

>546_residues
MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARATDTDSGQVMRNVFEGLYNLG
EGNKPVPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAKDFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQ
LGVKAVDDHTFEVELERPVPYFISLTAFPTFLPINEEFFKVQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD
KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKDANFKERPNVGVQFLRMNQQNKVLQNVSARQAIDQT
IDRKSFVNTLLNDGSTPTFGLVPKNFAKGPEGKDFRTANGDLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKK
TGEFLKGQLEKNLDGLTVNIKPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDETIAK
VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFKWAKIEK

Sequences:

>Translated_546_residues
MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARATDTDSGQVMRNVFEGLYNLG
EGNKPVPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAKDFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQ
LGVKAVDDHTFEVELERPVPYFISLTAFPTFLPINEEFFKVQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD
KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKDANFKERPNVGVQFLRMNQQNKVLQNVSARQAIDQT
IDRKSFVNTLLNDGSTPTFGLVPKNFAKGPEGKDFRTANGDLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKK
TGEFLKGQLEKNLDGLTVNIKPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDETIAK
VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFKWAKIEK
>Mature_546_residues
MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARATDTDSGQVMRNVFEGLYNLG
EGNKPVPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAKDFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQ
LGVKAVDDHTFEVELERPVPYFISLTAFPTFLPINEEFFKVQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD
KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKDANFKERPNVGVQFLRMNQQNKVLQNVSARQAIDQT
IDRKSFVNTLLNDGSTPTFGLVPKNFAKGPEGKDFRTANGDLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKK
TGEFLKGQLEKNLDGLTVNIKPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDETIAK
VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFKWAKIEK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the binding of dipeptides with high affinity. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=497, Percent_Identity=30.9859154929577, Blast_Score=231, Evalue=9e-62,
Organism=Escherichia coli, GI87081878, Length=531, Percent_Identity=30.5084745762712, Blast_Score=211, Evalue=8e-56,
Organism=Escherichia coli, GI1789397, Length=497, Percent_Identity=28.7726358148893, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI1787762, Length=510, Percent_Identity=25.8823529411765, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787052, Length=473, Percent_Identity=24.9471458773784, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1789966, Length=485, Percent_Identity=23.0927835051546, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61549; Mature: 61549

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARA
CCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHEEECCCCCCEEEECCCCC
TDTDSGQVMRNVFEGLYNLGEGNKPVPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAK
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHH
DFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQLGVKAVDDHTFEVELERPVP
HHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHCCCEEECCCEEEEEECCCCC
YFISLTAFPTFLPINEEFFKVQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD
EEEEEECCCEEECCCHHHEEECCCEEEECCCEEEEECEEEECCCCCCCCCEECCCCCCCC
KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKDANFKERPNVGVQFLR
CCCEEEEECCEEEEECCCCEEEEECCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEE
MNQQNKVLQNVSARQAIDQTIDRKSFVNTLLNDGSTPTFGLVPKNFAKGPEGKDFRTANG
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCCEECCCC
DLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKKTGEFLKGQLEKNLDGLTVNI
CEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
KPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDETIAK
CCCCCCCEEEEEEECCEEEECCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCHHHHHHHH
VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFK
HHHHHCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEE
WAKIEK
EEECCC
>Mature Secondary Structure
MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARA
CCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHEEECCCCCCEEEECCCCC
TDTDSGQVMRNVFEGLYNLGEGNKPVPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAK
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHH
DFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQLGVKAVDDHTFEVELERPVP
HHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHCCCEEECCCEEEEEECCCCC
YFISLTAFPTFLPINEEFFKVQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD
EEEEEECCCEEECCCHHHEEECCCEEEECCCEEEEECEEEECCCCCCCCCEECCCCCCCC
KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKDANFKERPNVGVQFLR
CCCEEEEECCEEEEECCCCEEEEECCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEE
MNQQNKVLQNVSARQAIDQTIDRKSFVNTLLNDGSTPTFGLVPKNFAKGPEGKDFRTANG
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCCEECCCC
DLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKKTGEFLKGQLEKNLDGLTVNI
CEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
KPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDETIAK
CCCCCCCEEEEEEECCEEEECCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCHHHHHHHH
VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFK
HHHHHCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEE
WAKIEK
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]