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The map label for this gene is xynB [H]

Identifier: 213690971

GI number: 213690971

Start: 53044

End: 53886

Strand: Reverse

Name: xynB [H]

Synonym: Blon_0047

Alternate gene names: 213690971

Gene position: 53886-53044 (Counterclockwise)

Preceding gene: 213690972

Following gene: 213690962

Centisome position: 1.9

GC content: 56.7

Gene sequence:

>843_bases
GTGTTCCACCTATGGTGGATATATGAAATATTTCGAATAGAAATTTCCGGCATCGACGGCAGCGCAGCGAAATTCGTCGG
ATATTGCCTTGATAACAGTGAAGAAATCGTTCCCGATCGTGTGCGTCCGTCCGTTCTCGTGATTCCGGGCGGCGGTTACG
AAATGACGTCGGATCGCGAGGCCGAGCCGATTGCAATGCAGTTTCTGGCGGCAGGTTTTAACGCTTTTGTGCTGCGATAT
TCGGTGAAGCCTTCCGTTTTTCCAATTGCGCTTTTGGAAGCCGCTGATGCGATGAAGATGATTCGCGAGCATGCAGCCGA
ATGGCATGTTGATCCGGAAGCGATTGCCGTGATCGGTTTTTCCGCAGGTGGTCATCTGGCTGCGAATCTCGCCACGTCCG
CCAGCGACGACGTGCTCGCCGCCCATGGTTACGATCCGGATGCGGTGCGCCCGAATGGTTTAATGCTCGCCTATCCGGTG
ATCACGTCCGGCCCGCTCGCGCATCGCGGTAGCTTCGACTCGCTGCTTGGCGAGCGCCGAAACGATACGGAAACGCTCGA
ATCCGTATCGATCGAACACCATATCGACACTAAAACACCGCCGGTGTTCGTATGGCACACCGTTCCCGACGAAGTCGTGC
CATATGAGAACACACTGATGCTGATCGACGCCTGCAAGAAGGCTGGCGTCAGTGTGGAGGCGCACCTGTTCCCGCAGGGC
GGTCACGGACTGTCGTTGGGCATTGCGGAAACCGCATGGCAGGGCATCGACGGCATCGAACCGAGCATGCAGATCTGGAC
GCAACTGGCTGTCGCGTGGATGCGCAGAACGTTCGCACGATAA

Upstream 100 bases:

>100_bases
CGTCAAAGCCAAGGAATGGCCGCGTGATTATCTCCAAGAAAACGTCCGCAGCCCCGTACGAAAAATAGCGGGACCAAATA
ATTCCTGCATAACGTGCGCC

Downstream 100 bases:

>100_bases
TCAGCGCCGCAGACGCCGTGATATCTGACCCCGTCTGTACAAGTCGCATTTCCCGTCTGCACCAACCCGCACCCTGCGTC
TGCACAACCCACAAAATCGG

Product: xylan esterase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MFHLWWIYEIFRIEISGIDGSAAKFVGYCLDNSEEIVPDRVRPSVLVIPGGGYEMTSDREAEPIAMQFLAAGFNAFVLRY
SVKPSVFPIALLEAADAMKMIREHAAEWHVDPEAIAVIGFSAGGHLAANLATSASDDVLAAHGYDPDAVRPNGLMLAYPV
ITSGPLAHRGSFDSLLGERRNDTETLESVSIEHHIDTKTPPVFVWHTVPDEVVPYENTLMLIDACKKAGVSVEAHLFPQG
GHGLSLGIAETAWQGIDGIEPSMQIWTQLAVAWMRRTFAR

Sequences:

>Translated_280_residues
MFHLWWIYEIFRIEISGIDGSAAKFVGYCLDNSEEIVPDRVRPSVLVIPGGGYEMTSDREAEPIAMQFLAAGFNAFVLRY
SVKPSVFPIALLEAADAMKMIREHAAEWHVDPEAIAVIGFSAGGHLAANLATSASDDVLAAHGYDPDAVRPNGLMLAYPV
ITSGPLAHRGSFDSLLGERRNDTETLESVSIEHHIDTKTPPVFVWHTVPDEVVPYENTLMLIDACKKAGVSVEAHLFPQG
GHGLSLGIAETAWQGIDGIEPSMQIWTQLAVAWMRRTFAR
>Mature_280_residues
MFHLWWIYEIFRIEISGIDGSAAKFVGYCLDNSEEIVPDRVRPSVLVIPGGGYEMTSDREAEPIAMQFLAAGFNAFVLRY
SVKPSVFPIALLEAADAMKMIREHAAEWHVDPEAIAVIGFSAGGHLAANLATSASDDVLAAHGYDPDAVRPNGLMLAYPV
ITSGPLAHRGSFDSLLGERRNDTETLESVSIEHHIDTKTPPVFVWHTVPDEVVPYENTLMLIDACKKAGVSVEAHLFPQG
GHGLSLGIAETAWQGIDGIEPSMQIWTQLAVAWMRRTFAR

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 30640; Mature: 30640

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHLWWIYEIFRIEISGIDGSAAKFVGYCLDNSEEIVPDRVRPSVLVIPGGGYEMTSDRE
CEEEEEEEEEEEEEEECCCCCHHHHEEEEECCCCCCCCCCCCCCEEEECCCCEECCCCCC
AEPIAMQFLAAGFNAFVLRYSVKPSVFPIALLEAADAMKMIREHAAEWHVDPEAIAVIGF
CCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
SAGGHLAANLATSASDDVLAAHGYDPDAVRPNGLMLAYPVITSGPLAHRGSFDSLLGERR
CCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCC
NDTETLESVSIEHHIDTKTPPVFVWHTVPDEVVPYENTLMLIDACKKAGVSVEAHLFPQG
CCHHHHHHEEHEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEHHHHCCCEEEEEEECCC
GHGLSLGIAETAWQGIDGIEPSMQIWTQLAVAWMRRTFAR
CCCEEECHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFHLWWIYEIFRIEISGIDGSAAKFVGYCLDNSEEIVPDRVRPSVLVIPGGGYEMTSDRE
CEEEEEEEEEEEEEEECCCCCHHHHEEEEECCCCCCCCCCCCCCEEEECCCCEECCCCCC
AEPIAMQFLAAGFNAFVLRYSVKPSVFPIALLEAADAMKMIREHAAEWHVDPEAIAVIGF
CCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
SAGGHLAANLATSASDDVLAAHGYDPDAVRPNGLMLAYPVITSGPLAHRGSFDSLLGERR
CCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCC
NDTETLESVSIEHHIDTKTPPVFVWHTVPDEVVPYENTLMLIDACKKAGVSVEAHLFPQG
CCHHHHHHEEHEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEHHHHCCCEEEEEEECCC
GHGLSLGIAETAWQGIDGIEPSMQIWTQLAVAWMRRTFAR
CCCEEECHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]