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The map label for this gene is ykgD [C]

Identifier: 209552189

GI number: 209552189

Start: 299688

End: 300593

Strand: Reverse

Name: ykgD [C]

Synonym: Rleg2_6348

Alternate gene names: 209552189

Gene position: 300593-299688 (Counterclockwise)

Preceding gene: 209552193

Following gene: 209552188

Centisome position: 97.36

GC content: 59.16

Gene sequence:

>906_bases
ATGGATCTATTGGATGACTGGCTAAAGATGTTCTCCCAACCAAAGTACCGGTTGGTTCGTAGTGAGATGACCGGGCACTG
GGGGTTTAGATTAGACGACGGCGCAGCTATCGCCTTCCACTTAATCCGCCGCGGGGGAGCATGGTTGCGGCGGGATGGCC
AGGCGGACGTACTGCTCGAAGAGGGCGACCTCGTCATCCTGAGCGGAGGAACTCCGCACGAGTTAGTTGACGAGCCTGAA
ACGAAAGCCGAGCCTGTTGAATGTTTTGGCAAACGCAAATTTGATTTGGCAGATTGCTTCGAACGAACCGAAATCTTTTG
TGGGCAATTTCAGCCCGATGTAGTCCGGGGCCAGTTCGGATCCGCAGCACTGCCGCCCTTTGTCCACTTAAAGTCACATG
AAGTCGCGGGCGACGCCGGCATCACGGGCCTAACGACGCTGCTGACATCAGAGCTGGATTCTGAGCGGCCGGGAACCGAA
TTGCTGATGGAGCGGTTGGCCGATAGTCTTCTAGTCTATGTCCTGCGAAGCGCTGCAGCCCAAGCCGGGCACGGTACGGG
ATGGCTGTCCGCCATGCAAGACGCGCAGCTTGCGCGCGTGTTCAGGGCAATTCACGCATCGCCGGAGAGAGACTGGACGG
TCGACACTATGGCGCAGGAAGCAGGCTTGTCTCGAGCGGCCTTCGCGCGGCGCTTCAATAAGCGCGTCGGGGAACCGCCT
TTGGGGTACCTCACAGCGTGGCGCATGACCCTGGCCGCGAGCCGGCTCGGGGCCGGAAAAGTTCCTCTTCAACTTGTCGC
TGCCGAAATTGGCTATCAGTCGGAGGCTGCATTTAGTCGTGCCTTCAGGAAGCATTTCGGCGTCCCGCCGGGCGCATACA
GAAAGACCGGGGGCATTGGCCACTGA

Upstream 100 bases:

>100_bases
CTTAGTTTTTGATAGCCCGATTTTAAGTTTAACCCCGCGACGATCAATGCTAGGAAAGCGCAATTAGTTTGCTGATCGTC
TTGATGAGATCGAGGTGCCG

Downstream 100 bases:

>100_bases
CTTGGTAGTGCCCCTGCGCTGGTTCTAAATACCTAGTGTTTTCGGCCTGCTGCAAACCTTCGCTGTGTTGGGCGTCGCCG
CTTCAGAGGCCTATCAAGAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDLLDDWLKMFSQPKYRLVRSEMTGHWGFRLDDGAAIAFHLIRRGGAWLRRDGQADVLLEEGDLVILSGGTPHELVDEPE
TKAEPVECFGKRKFDLADCFERTEIFCGQFQPDVVRGQFGSAALPPFVHLKSHEVAGDAGITGLTTLLTSELDSERPGTE
LLMERLADSLLVYVLRSAAAQAGHGTGWLSAMQDAQLARVFRAIHASPERDWTVDTMAQEAGLSRAAFARRFNKRVGEPP
LGYLTAWRMTLAASRLGAGKVPLQLVAAEIGYQSEAAFSRAFRKHFGVPPGAYRKTGGIGH

Sequences:

>Translated_301_residues
MDLLDDWLKMFSQPKYRLVRSEMTGHWGFRLDDGAAIAFHLIRRGGAWLRRDGQADVLLEEGDLVILSGGTPHELVDEPE
TKAEPVECFGKRKFDLADCFERTEIFCGQFQPDVVRGQFGSAALPPFVHLKSHEVAGDAGITGLTTLLTSELDSERPGTE
LLMERLADSLLVYVLRSAAAQAGHGTGWLSAMQDAQLARVFRAIHASPERDWTVDTMAQEAGLSRAAFARRFNKRVGEPP
LGYLTAWRMTLAASRLGAGKVPLQLVAAEIGYQSEAAFSRAFRKHFGVPPGAYRKTGGIGH
>Mature_301_residues
MDLLDDWLKMFSQPKYRLVRSEMTGHWGFRLDDGAAIAFHLIRRGGAWLRRDGQADVLLEEGDLVILSGGTPHELVDEPE
TKAEPVECFGKRKFDLADCFERTEIFCGQFQPDVVRGQFGSAALPPFVHLKSHEVAGDAGITGLTTLLTSELDSERPGTE
LLMERLADSLLVYVLRSAAAQAGHGTGWLSAMQDAQLARVFRAIHASPERDWTVDTMAQEAGLSRAAFARRFNKRVGEPP
LGYLTAWRMTLAASRLGAGKVPLQLVAAEIGYQSEAAFSRAFRKHFGVPPGAYRKTGGIGH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=303, Percent_Identity=26.7326732673267, Blast_Score=91, Evalue=7e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33080; Mature: 33080

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLDDWLKMFSQPKYRLVRSEMTGHWGFRLDDGAAIAFHLIRRGGAWLRRDGQADVLLE
CCHHHHHHHHHCCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHHCCHHEECCCCCCEEEE
EGDLVILSGGTPHELVDEPETKAEPVECFGKRKFDLADCFERTEIFCGQFQPDVVRGQFG
CCCEEEECCCCCHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCC
SAALPPFVHLKSHEVAGDAGITGLTTLLTSELDSERPGTELLMERLADSLLVYVLRSAAA
CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QAGHGTGWLSAMQDAQLARVFRAIHASPERDWTVDTMAQEAGLSRAAFARRFNKRVGEPP
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCC
LGYLTAWRMTLAASRLGAGKVPLQLVAAEIGYQSEAAFSRAFRKHFGVPPGAYRKTGGIG
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
H
C
>Mature Secondary Structure
MDLLDDWLKMFSQPKYRLVRSEMTGHWGFRLDDGAAIAFHLIRRGGAWLRRDGQADVLLE
CCHHHHHHHHHCCCHHHHHHHHHCCCCCEEECCCHHHHHHHHHHCCHHEECCCCCCEEEE
EGDLVILSGGTPHELVDEPETKAEPVECFGKRKFDLADCFERTEIFCGQFQPDVVRGQFG
CCCEEEECCCCCHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCC
SAALPPFVHLKSHEVAGDAGITGLTTLLTSELDSERPGTELLMERLADSLLVYVLRSAAA
CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QAGHGTGWLSAMQDAQLARVFRAIHASPERDWTVDTMAQEAGLSRAAFARRFNKRVGEPP
HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCC
LGYLTAWRMTLAASRLGAGKVPLQLVAAEIGYQSEAAFSRAFRKHFGVPPGAYRKTGGIG
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
H
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]