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The map label for this gene is ydfH [C]

Identifier: 209552115

GI number: 209552115

Start: 209062

End: 209796

Strand: Reverse

Name: ydfH [C]

Synonym: Rleg2_6266

Alternate gene names: 209552115

Gene position: 209796-209062 (Counterclockwise)

Preceding gene: 209552118

Following gene: 209552112

Centisome position: 67.95

GC content: 55.78

Gene sequence:

>735_bases
ATGGCGGACATGGGGCCGGGGGCTGACAAAGCTGAGAAAATCACCGGAAGCGCGCGCGTATACGCACAGCTTAGAGACGA
AATTCTCCGACTCGAGCTTGCGCCGGGATCGCCCATCGACGAAAACAGTCTGAGCGAACGCTTCGATCTTTCTCGTTCCC
CAGTTCGCGAGGCACTTGTCCGCCTTTCGAGCGAAGGGTTTGTCAACATCCTTCCCAATCGAAGCACGATCGTCGCGCCT
ATCGACTTCAGGGACGTTCCGAAATACCTCGACTCTCTTGATCTCCTTCAGCGGGCAACAACGAGGCTTGCGGCGCAATT
TCGCACGACCTCCGATCTCCGGACGATCGAAAAGCTGCAGAGTGAATTCGAGAGGGCCTTTAACAAGAGCCTCAAGACCC
GAGATCCCATCTACAACATCGACGCAAACTTCAACTTCCACATGGCTATCGCTGAGGCAGGCAAAAACGCCTACTTCCAA
ATGTTTTACAAGCGCCTGCTGGATGAGGGGCGGCGCATGTTGCACTTTCATTTCGAGTTTCAGGCGCTGTCGGAGCATAT
GTCCTTCGACGAGGTCGCGGTTCACCATGTGCAGATGATCGAAGCGATTCGCGAGAAGGACCTCGAGCACGCGGATTCGG
TCGCGCACGAGCATGCCATGCAGTTCAAGGGACGGTTCCTCGAGTACTACGATCAGAGCGTCACAGCAAAAATGAAGCTC
GCCCCGCCCACCTGA

Upstream 100 bases:

>100_bases
ACCATAATGTAACAGCCAGATTGTGTTTTTTCGCTTTGTTTGATGCGAAGCCGATGAAGTGCTAACGAGTTTGTAGAATG
CGATGAGAGGGTGGCAGAGT

Downstream 100 bases:

>100_bases
CGGGTAAAGCTTCAAGTAAACCGCTGAGGCCGGAAGGGCGTCAGATCGACCGCAGGATTTTCATGGGCAATGAGTTGTGC
AACAAGCTGTCCGGTCGTCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Gntr Family; HTH-Type Transcriptional Regulator; GntR Domain-Containing Protein; Regulatory Protein; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein; Transcriptional Regulator GntR; Transcriptional Regulator Protein; Transcriptional Regulator YdhC; GntR-Family Transcriptional Regulator; Regulatory Protein GntR HTHGntR C-Terminal Domain; Transcriptional Regulatory Protein; Transcriptional Regulatory Protein GntR Family; GntR-Like; Regulatory Protein GntR; Transcription Regulator Family Protein; Transcription Regulator Protein; FCD Domain Protein; Naphthalene Degradation Regulatory Protein; Regulatory Protein GntR HTH

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MADMGPGADKAEKITGSARVYAQLRDEILRLELAPGSPIDENSLSERFDLSRSPVREALVRLSSEGFVNILPNRSTIVAP
IDFRDVPKYLDSLDLLQRATTRLAAQFRTTSDLRTIEKLQSEFERAFNKSLKTRDPIYNIDANFNFHMAIAEAGKNAYFQ
MFYKRLLDEGRRMLHFHFEFQALSEHMSFDEVAVHHVQMIEAIREKDLEHADSVAHEHAMQFKGRFLEYYDQSVTAKMKL
APPT

Sequences:

>Translated_244_residues
MADMGPGADKAEKITGSARVYAQLRDEILRLELAPGSPIDENSLSERFDLSRSPVREALVRLSSEGFVNILPNRSTIVAP
IDFRDVPKYLDSLDLLQRATTRLAAQFRTTSDLRTIEKLQSEFERAFNKSLKTRDPIYNIDANFNFHMAIAEAGKNAYFQ
MFYKRLLDEGRRMLHFHFEFQALSEHMSFDEVAVHHVQMIEAIREKDLEHADSVAHEHAMQFKGRFLEYYDQSVTAKMKL
APPT
>Mature_243_residues
ADMGPGADKAEKITGSARVYAQLRDEILRLELAPGSPIDENSLSERFDLSRSPVREALVRLSSEGFVNILPNRSTIVAPI
DFRDVPKYLDSLDLLQRATTRLAAQFRTTSDLRTIEKLQSEFERAFNKSLKTRDPIYNIDANFNFHMAIAEAGKNAYFQM
FYKRLLDEGRRMLHFHFEFQALSEHMSFDEVAVHHVQMIEAIREKDLEHADSVAHEHAMQFKGRFLEYYDQSVTAKMKLA
PPT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=127, Percent_Identity=31.496062992126, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28057; Mature: 27926

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADMGPGADKAEKITGSARVYAQLRDEILRLELAPGSPIDENSLSERFDLSRSPVREALV
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHCCCCHHHHHHHH
RLSSEGFVNILPNRSTIVAPIDFRDVPKYLDSLDLLQRATTRLAAQFRTTSDLRTIEKLQ
HHCCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEFERAFNKSLKTRDPIYNIDANFNFHMAIAEAGKNAYFQMFYKRLLDEGRRMLHFHFEF
HHHHHHHHHCCCCCCCEEEECCCCEEEEEHHHHCCHHHHHHHHHHHHHHCHHHEEHHHHH
QALSEHMSFDEVAVHHVQMIEAIREKDLEHADSVAHEHAMQFKGRFLEYYDQSVTAKMKL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEE
APPT
CCCC
>Mature Secondary Structure 
ADMGPGADKAEKITGSARVYAQLRDEILRLELAPGSPIDENSLSERFDLSRSPVREALV
CCCCCCCCHHHHHCCHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHCCCCHHHHHHHH
RLSSEGFVNILPNRSTIVAPIDFRDVPKYLDSLDLLQRATTRLAAQFRTTSDLRTIEKLQ
HHCCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEFERAFNKSLKTRDPIYNIDANFNFHMAIAEAGKNAYFQMFYKRLLDEGRRMLHFHFEF
HHHHHHHHHCCCCCCCEEEECCCCEEEEEHHHHCCHHHHHHHHHHHHHHCHHHEEHHHHH
QALSEHMSFDEVAVHHVQMIEAIREKDLEHADSVAHEHAMQFKGRFLEYYDQSVTAKMKL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEE
APPT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA