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The map label for this gene is ltrA [H]

Identifier: 209552098

GI number: 209552098

Start: 190119

End: 191096

Strand: Reverse

Name: ltrA [H]

Synonym: Rleg2_6249

Alternate gene names: 209552098

Gene position: 191096-190119 (Counterclockwise)

Preceding gene: 209552099

Following gene: 209552092

Centisome position: 61.89

GC content: 52.76

Gene sequence:

>978_bases
ATGAATCTGGAAGACATTTCGGCTGTAGAGCAAGTGGTTAGATGTGGATCTCTGTCGGAGGCATCACGGAAGTTCCTCGT
TTCGAAGGCGACCCTAAGCCACCGAATTAGAAGGCTTGAGGCTGAACTCGGCGTTAGCTTGTTCGATCGGGGCAGCGCAG
AGTTACGTCTGACGTCGGCGGGCAGAACTTTTTACGCTTATGCGGAAAAGATAGCAAAGGCGTGCGAAGAGGCCTCTGAT
GCGATGATTTCTCAACGCAGCGAGGACTTAATTCACCTGCGTATTGGAACCACCGACGAGCTTGGAACAAATTTTTTCGC
ACCGATGGCTCTCCGTTTTCTGAAACGCGCTCCAACGGTTAGCATGGAACTTGTGCTCCTACGCTCGACAGAGCTGTTTG
ACCGAAATTCGGGTTTGGACTGCGTGATATTCGCTGGGGATCCTCCGGCAACAGAGGCTGCGAACTTTGTCGCCAAAAAG
CTCCTGACCTACTCGAGCCAACTCTGCGCTGCGCCGTCATACCTTGAAAATTGCGGCAATCCGGCTTCTCCAGAGCAGCT
TAAGGCTCACGCACTCGTGGCGGACACTTCCCAACTCCGCACACGGCCCTGGACCTTAACGAACGGTCTCGAGCGGAGCA
CGATTTATCCGAACGGCCGGTTGTCCTCAAATGACTTCTGGATGATGAAGCTGTCTGTTGTACAAGGATTTGGTATCGGA
TTTTTCCCAAGCTGGTTCATCGCCGACGACCTTGCAAAAGGCATTTTAGTTCCAGTTTTGCCCGAGTGGCGCTCGGAACA
AGCACACGTGTCCCTGCTTTATCGGTCCCACCGTTTCAAGAACCCCTACATTCGCGAATTAATAGAGTTTTTTGCCGCCG
ACTTTGAGGGCTTTTTTAGCTTTCCCTATCGTGAGATGGACCTCGTCGAAGGAACGGGGCCCCAAAAAAAACGAGGGCGT
GTCCCGAACAGCGAGTGA

Upstream 100 bases:

>100_bases
TCAAGGCCTGCTGACCTTGGCGCACGATGACGAGCTATAGCTATCCATTGCCCTCCGTCGCTGGTACAAAAAGGAACTCG
AGAAGGGATCCAATCGCACG

Downstream 100 bases:

>100_bases
GATTGCCGGTACCCGGTGACCTGCCACTGAATTTTCATCCAGCTGCGACTAGTCTAGACCGTATGTTCGCGGTGTTCTGA
CGCACGTATTCCGGTCCAGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MNLEDISAVEQVVRCGSLSEASRKFLVSKATLSHRIRRLEAELGVSLFDRGSAELRLTSAGRTFYAYAEKIAKACEEASD
AMISQRSEDLIHLRIGTTDELGTNFFAPMALRFLKRAPTVSMELVLLRSTELFDRNSGLDCVIFAGDPPATEAANFVAKK
LLTYSSQLCAAPSYLENCGNPASPEQLKAHALVADTSQLRTRPWTLTNGLERSTIYPNGRLSSNDFWMMKLSVVQGFGIG
FFPSWFIADDLAKGILVPVLPEWRSEQAHVSLLYRSHRFKNPYIRELIEFFAADFEGFFSFPYREMDLVEGTGPQKKRGR
VPNSE

Sequences:

>Translated_325_residues
MNLEDISAVEQVVRCGSLSEASRKFLVSKATLSHRIRRLEAELGVSLFDRGSAELRLTSAGRTFYAYAEKIAKACEEASD
AMISQRSEDLIHLRIGTTDELGTNFFAPMALRFLKRAPTVSMELVLLRSTELFDRNSGLDCVIFAGDPPATEAANFVAKK
LLTYSSQLCAAPSYLENCGNPASPEQLKAHALVADTSQLRTRPWTLTNGLERSTIYPNGRLSSNDFWMMKLSVVQGFGIG
FFPSWFIADDLAKGILVPVLPEWRSEQAHVSLLYRSHRFKNPYIRELIEFFAADFEGFFSFPYREMDLVEGTGPQKKRGR
VPNSE
>Mature_325_residues
MNLEDISAVEQVVRCGSLSEASRKFLVSKATLSHRIRRLEAELGVSLFDRGSAELRLTSAGRTFYAYAEKIAKACEEASD
AMISQRSEDLIHLRIGTTDELGTNFFAPMALRFLKRAPTVSMELVLLRSTELFDRNSGLDCVIFAGDPPATEAANFVAKK
LLTYSSQLCAAPSYLENCGNPASPEQLKAHALVADTSQLRTRPWTLTNGLERSTIYPNGRLSSNDFWMMKLSVVQGFGIG
FFPSWFIADDLAKGILVPVLPEWRSEQAHVSLLYRSHRFKNPYIRELIEFFAADFEGFFSFPYREMDLVEGTGPQKKRGR
VPNSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=29.1525423728814, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1789639, Length=278, Percent_Identity=27.3381294964029, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI145693193, Length=285, Percent_Identity=28.0701754385965, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=26.2798634812287, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=29.6052631578947, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787128, Length=307, Percent_Identity=24.4299674267101, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI157672245, Length=218, Percent_Identity=26.1467889908257, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36384; Mature: 36384

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLEDISAVEQVVRCGSLSEASRKFLVSKATLSHRIRRLEAELGVSLFDRGSAELRLTSA
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEECC
GRTFYAYAEKIAKACEEASDAMISQRSEDLIHLRIGTTDELGTNFFAPMALRFLKRAPTV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHCCCC
SMELVLLRSTELFDRNSGLDCVIFAGDPPATEAANFVAKKLLTYSSQLCAAPSYLENCGN
EEEEEEEECHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC
PASPEQLKAHALVADTSQLRTRPWTLTNGLERSTIYPNGRLSSNDFWMMKLSVVQGFGIG
CCCHHHHHHHHHEECHHHHCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEEEHHHCCCCC
FFPSWFIADDLAKGILVPVLPEWRSEQAHVSLLYRSHRFKNPYIRELIEFFAADFEGFFS
CCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
FPYREMDLVEGTGPQKKRGRVPNSE
CCCCHHHHHCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MNLEDISAVEQVVRCGSLSEASRKFLVSKATLSHRIRRLEAELGVSLFDRGSAELRLTSA
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEECC
GRTFYAYAEKIAKACEEASDAMISQRSEDLIHLRIGTTDELGTNFFAPMALRFLKRAPTV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHCCCC
SMELVLLRSTELFDRNSGLDCVIFAGDPPATEAANFVAKKLLTYSSQLCAAPSYLENCGN
EEEEEEEECHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC
PASPEQLKAHALVADTSQLRTRPWTLTNGLERSTIYPNGRLSSNDFWMMKLSVVQGFGIG
CCCHHHHHHHHHEECHHHHCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEEEHHHCCCCC
FFPSWFIADDLAKGILVPVLPEWRSEQAHVSLLYRSHRFKNPYIRELIEFFAADFEGFFS
CCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
FPYREMDLVEGTGPQKKRGRVPNSE
CCCCHHHHHCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]