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The map label for this gene is ydfH [C]

Identifier: 209552092

GI number: 209552092

Start: 183701

End: 184405

Strand: Reverse

Name: ydfH [C]

Synonym: Rleg2_6243

Alternate gene names: 209552092

Gene position: 184405-183701 (Counterclockwise)

Preceding gene: 209552098

Following gene: 209552090

Centisome position: 59.73

GC content: 56.17

Gene sequence:

>705_bases
ATGGATAACGGCATGAGTGGAACGATCAGGGGCGGGCAGCTGGATCGCTCGCGGCAGGTAGCGCTGCAGGTACATGAAAT
CCTGCGGGAACGGATCCTCAAGGTGGAGCTGGTACCGGGAACAGTTTTGTCCCGGGCATCGCTCCAGCTGGAGTTCGGGG
TGAGCCAGACGCCGGTACGCGACGCATTGATGCGGCTGCAGGAAGAGGGCATAGTCGACGTCTATCCGCAATATGCGACC
GTCGTCGCCAAGATCGACATCGATCATGCCAAGCAAGCGCAGTTCCTTCGGTTGTCGATCGAACTCGAAGCGGTGCGAAG
GCTAACGGAGGTGGCCCCCGCCAAGACTGCGGCCGAGCTTGGAGAAATCCTTGCTAAGCAAAAAACGGTTGCAACTCCTG
AATCCTACGACACCTTTGACGACATCGACCGCGAGTTTCATCGAAAACTCTATGAAAGGAGTGGCATCCTGCAGCTCTGG
GCAAACGTTCGACGCCAGAGCGTTCACCTCGATCGATTGCGCCGCTTGAACTTACCGATGCCTGGAAAGATGCAAATGGT
AATCGCCGACCACGAAGCAATCGTTGAGGGGATAGCGTCCGGCGAGCCAGAGGTGGCGGCGGCAGCATTAAAGAAGCATT
TGTCAGGTACCCTTTCTATCATCGACGTTATCAGCGCAGAATTCCCTGACTACATTCGAGTTTGA

Upstream 100 bases:

>100_bases
CCGGTTTCCGCCTCATGTCAAAGCGAATAATGCATTGAAGCACTAAAACATCAGTGCATCAACCCCGGTTCTGTGCTTTA
GTACGCTGACAAGCATATGG

Downstream 100 bases:

>100_bases
GTGGGTTTCTGCAAATCTTACTCGGCGGCGAACCTCTGCGCTCTCGCGCCAATCTGCAACCCTGTTCACCCCGAGGACAG
CAGGATTTCGGGCGTGCATC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MDNGMSGTIRGGQLDRSRQVALQVHEILRERILKVELVPGTVLSRASLQLEFGVSQTPVRDALMRLQEEGIVDVYPQYAT
VVAKIDIDHAKQAQFLRLSIELEAVRRLTEVAPAKTAAELGEILAKQKTVATPESYDTFDDIDREFHRKLYERSGILQLW
ANVRRQSVHLDRLRRLNLPMPGKMQMVIADHEAIVEGIASGEPEVAAAALKKHLSGTLSIIDVISAEFPDYIRV

Sequences:

>Translated_234_residues
MDNGMSGTIRGGQLDRSRQVALQVHEILRERILKVELVPGTVLSRASLQLEFGVSQTPVRDALMRLQEEGIVDVYPQYAT
VVAKIDIDHAKQAQFLRLSIELEAVRRLTEVAPAKTAAELGEILAKQKTVATPESYDTFDDIDREFHRKLYERSGILQLW
ANVRRQSVHLDRLRRLNLPMPGKMQMVIADHEAIVEGIASGEPEVAAAALKKHLSGTLSIIDVISAEFPDYIRV
>Mature_234_residues
MDNGMSGTIRGGQLDRSRQVALQVHEILRERILKVELVPGTVLSRASLQLEFGVSQTPVRDALMRLQEEGIVDVYPQYAT
VVAKIDIDHAKQAQFLRLSIELEAVRRLTEVAPAKTAAELGEILAKQKTVATPESYDTFDDIDREFHRKLYERSGILQLW
ANVRRQSVHLDRLRRLNLPMPGKMQMVIADHEAIVEGIASGEPEVAAAALKKHLSGTLSIIDVISAEFPDYIRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=220, Percent_Identity=25.4545454545455, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26186; Mature: 26186

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNGMSGTIRGGQLDRSRQVALQVHEILRERILKVELVPGTVLSRASLQLEFGVSQTPVR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHEEEEECCCCCCHH
DALMRLQEEGIVDVYPQYATVVAKIDIDHAKQAQFLRLSIELEAVRRLTEVAPAKTAAEL
HHHHHHHHCCCEEECCCHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
GEILAKQKTVATPESYDTFDDIDREFHRKLYERSGILQLWANVRRQSVHLDRLRRLNLPM
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
PGKMQMVIADHEAIVEGIASGEPEVAAAALKKHLSGTLSIIDVISAEFPDYIRV
CCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCC
>Mature Secondary Structure
MDNGMSGTIRGGQLDRSRQVALQVHEILRERILKVELVPGTVLSRASLQLEFGVSQTPVR
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHEEEEECCCCCCHH
DALMRLQEEGIVDVYPQYATVVAKIDIDHAKQAQFLRLSIELEAVRRLTEVAPAKTAAEL
HHHHHHHHCCCEEECCCHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
GEILAKQKTVATPESYDTFDDIDREFHRKLYERSGILQLWANVRRQSVHLDRLRRLNLPM
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
PGKMQMVIADHEAIVEGIASGEPEVAAAALKKHLSGTLSIIDVISAEFPDYIRV
CCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]