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The map label for this gene is abgR [H]

Identifier: 209551955

GI number: 209551955

Start: 14591

End: 15490

Strand: Reverse

Name: abgR [H]

Synonym: Rleg2_6089

Alternate gene names: 209551955

Gene position: 15490-14591 (Counterclockwise)

Preceding gene: 209551963

Following gene: 209551954

Centisome position: 5.02

GC content: 59.11

Gene sequence:

>900_bases
ATGCGGCTCCTCGTTTCACGTCACCTGGAAAATTTTCTGGCCATTTACGAAGCGCGGAACATGCACCGCGCGTCGGGAAG
CAAGGGCATCACGCAGCCGGCATTGACGAAAAGCCTCAAGACATTGGAAGACGACATCGGTTCAGCGCTCTTCGTGCGAA
CGCCCTGGGGCCTAGAACCGACCGAAGCCGGCCAGACGCTTTACCGCCACGCCTGTACCATCGATCAGGAAGCCCGGTTC
GCTTCGCTGAACATGAACAACGTTCTTGCTGGTAGGGGCGGCAAGATCCGCATTGGCGTCGGCCCCGGTCTAGCTGTCAG
TTCGTTTCCGAAAATCCTCGTTGATTTCCGGCGCCGGTTTCCCGGGGTCCAGGTAATTGCGCAGACGGGGCTGACCTCCC
AACTGGTCGAGGAACTACTGCGCGATACGCTCGACGTCATTGCTACCGCTCGGCCGCCGCGTGATCTACCGGAACATTTT
TCTCGCAGCCCGCTATTTCCCATCCAGATGGCGGCGATCGCGCGCCGGGGCCATCCCCTGTTGGCGCCGCGGACCGTGCG
GGGCGAAGATCTGTTCGAATACGGTTGCGTGACGTTCCAGGAGAGCGAGGATTTCGTCAAGCAAACCCGCCAGCTCTTCG
GAGCCGCAGCGGACAAGCTGAATGTGGTCGTCGAAACGAATTCGATTTCCGTCATGCTGGATATGGTGGCATCGACGGAT
TGCTTCGCATTCGTAGGGGACATTATCGTCCCCCGAGCGATACAGGCCGGTCTTGAGAGACTGCACTTGCCCGACCTGCG
ATGGGAGATGATCATCGACCTGATGTGCAAGCGATCGCTCGCGCAAACAAAGCCGGTACGCGCTTTGCGTGAGGGCTGGC
TGCATCAATCGTTTGTTTAG

Upstream 100 bases:

>100_bases
CCGCCGCTGGCCCGCTTCGCCTCATTTTCGAATGCTAGCATTCCGTCTTGATAAGCGGTAATAGAAGATGGTGTGCATTC
AATATAAAAAAGTTATCGAA

Downstream 100 bases:

>100_bases
GGGCTTCCCTGGGGCTTTTTTGTATCGTTCGGGAATTGGTGCACGGATCCAATATCAATGTTTTGCCTCTATGCGACCGG
GATCGAAAATAGCTTGATTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MRLLVSRHLENFLAIYEARNMHRASGSKGITQPALTKSLKTLEDDIGSALFVRTPWGLEPTEAGQTLYRHACTIDQEARF
ASLNMNNVLAGRGGKIRIGVGPGLAVSSFPKILVDFRRRFPGVQVIAQTGLTSQLVEELLRDTLDVIATARPPRDLPEHF
SRSPLFPIQMAAIARRGHPLLAPRTVRGEDLFEYGCVTFQESEDFVKQTRQLFGAAADKLNVVVETNSISVMLDMVASTD
CFAFVGDIIVPRAIQAGLERLHLPDLRWEMIIDLMCKRSLAQTKPVRALREGWLHQSFV

Sequences:

>Translated_299_residues
MRLLVSRHLENFLAIYEARNMHRASGSKGITQPALTKSLKTLEDDIGSALFVRTPWGLEPTEAGQTLYRHACTIDQEARF
ASLNMNNVLAGRGGKIRIGVGPGLAVSSFPKILVDFRRRFPGVQVIAQTGLTSQLVEELLRDTLDVIATARPPRDLPEHF
SRSPLFPIQMAAIARRGHPLLAPRTVRGEDLFEYGCVTFQESEDFVKQTRQLFGAAADKLNVVVETNSISVMLDMVASTD
CFAFVGDIIVPRAIQAGLERLHLPDLRWEMIIDLMCKRSLAQTKPVRALREGWLHQSFV
>Mature_299_residues
MRLLVSRHLENFLAIYEARNMHRASGSKGITQPALTKSLKTLEDDIGSALFVRTPWGLEPTEAGQTLYRHACTIDQEARF
ASLNMNNVLAGRGGKIRIGVGPGLAVSSFPKILVDFRRRFPGVQVIAQTGLTSQLVEELLRDTLDVIATARPPRDLPEHF
SRSPLFPIQMAAIARRGHPLLAPRTVRGEDLFEYGCVTFQESEDFVKQTRQLFGAAADKLNVVVETNSISVMLDMVASTD
CFAFVGDIIVPRAIQAGLERLHLPDLRWEMIIDLMCKRSLAQTKPVRALREGWLHQSFV

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=229, Percent_Identity=27.0742358078603, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=26.643598615917, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788297, Length=141, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790399, Length=246, Percent_Identity=25.609756097561, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788887, Length=232, Percent_Identity=26.7241379310345, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789204, Length=242, Percent_Identity=24.7933884297521, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33331; Mature: 33331

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLVSRHLENFLAIYEARNMHRASGSKGITQPALTKSLKTLEDDIGSALFVRTPWGLEP
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCH
TEAGQTLYRHACTIDQEARFASLNMNNVLAGRGGKIRIGVGPGLAVSSFPKILVDFRRRF
HHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHC
PGVQVIAQTGLTSQLVEELLRDTLDVIATARPPRDLPEHFSRSPLFPIQMAAIARRGHPL
CCCEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCC
LAPRTVRGEDLFEYGCVTFQESEDFVKQTRQLFGAAADKLNVVVETNSISVMLDMVASTD
CCCCCCCCCHHHHHCCEEEECCHHHHHHHHHHHHHHHHHEEEEEECCCCEEHHHHHHCCH
CFAFVGDIIVPRAIQAGLERLHLPDLRWEMIIDLMCKRSLAQTKPVRALREGWLHQSFV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRLLVSRHLENFLAIYEARNMHRASGSKGITQPALTKSLKTLEDDIGSALFVRTPWGLEP
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCH
TEAGQTLYRHACTIDQEARFASLNMNNVLAGRGGKIRIGVGPGLAVSSFPKILVDFRRRF
HHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHC
PGVQVIAQTGLTSQLVEELLRDTLDVIATARPPRDLPEHFSRSPLFPIQMAAIARRGHPL
CCCEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCCC
LAPRTVRGEDLFEYGCVTFQESEDFVKQTRQLFGAAADKLNVVVETNSISVMLDMVASTD
CCCCCCCCCHHHHHCCEEEECCHHHHHHHHHHHHHHHHHEEEEEECCCCEEHHHHHHCCH
CFAFVGDIIVPRAIQAGLERLHLPDLRWEMIIDLMCKRSLAQTKPVRALREGWLHQSFV
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]