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The map label for this gene is yhjC [H]

Identifier: 209550674

GI number: 209550674

Start: 3165244

End: 3166155

Strand: Direct

Name: yhjC [H]

Synonym: Rleg2_3098

Alternate gene names: 209550674

Gene position: 3165244-3166155 (Clockwise)

Preceding gene: 209550666

Following gene: 209550676

Centisome position: 69.75

GC content: 61.51

Gene sequence:

>912_bases
ATGGATCAGCTCTCGGCAATGCGCGTCTTCATCCGCGTGGTGGAGACGGGCAATTTCACCCGCGCCGCCGACATGCTCGC
CATGCCCAAGGCGACGGTCACCAATCTCATCCAGGGCCTGGAGGCGCATCTGCGCACCAAGCTTTTGAATCGCACGACGC
GCCGGGTGATGGTGACCACGGACGGCGCGCTTTATTACGAACGCGCCGCCCAGATCATTTCGGAATTGGAGGAACTCGAC
GGCAGCCTCTCCAATTCGCAGAGCCTGCCGAGCGGGCGGCTGCGCGTCGAAATGGCCGGTGCTTTCGCCGATTGGATCGT
CGTTCCCGCACTCTGCGATTTTTATCAGCGTTATCCCGATATCCGCATCGACCTCGGTGTCGGCGACCGCACGGTCGATT
ATCTTGCGGAGAATGTCGACTGCGCGCTGCGGGGCGGCACGCCGGCCGACCAGTCGCTGATCGCCCGACGTGTCTCCGAA
GTCGAGATGATCACCTGTGCTTCGCCGAACTACATCCAAAAGTTCGGCATGCCCGAGCGGCCGGAGGATCTGGAGGCCGA
TCATTACTCGGTCAACTATTTCCGCGCCCAGAACAACCGAACACTGCCTTTTGAATTTCGCCGGCACAACGAGGTGATCG
AGACCAGTCCGCGTTACATCGCTTCGGTCAACGATAGCCGTACCTATCTGACAGCGGCACTGACGGGTCTCGGCATCGCG
CAGGTGCCGATCTTCATGGCGCGTGAGCCGATGGCAAAGGGTGAGCTCGTCCGCGTGCTCCCGGACTGGCGCCGCGATCC
GCTGCCGCTCTATGTCGTCTACCCCCCGAACCGCCACCTCAGCAACAAGGTGCGCGTGTTTGTCGACTGGCTGGTGAAGC
TTCTGGTGGAGGCGAGACTGAACGATCTCTGA

Upstream 100 bases:

>100_bases
AAGATATTGTTATTCCATTCAGGGAATAAGAAGCGATATCGCGATTACACTGTTCCAGATCTCGAACAATGGTGCAACGC
AAACTGCGGATTTCAAACCG

Downstream 100 bases:

>100_bases
GCGGCAAAAGAAATGCGGCCCGGCCAAAAGAATACGGCCCGGAAGGCAGGAAACCTTCAACGGGCCGCAATGTGCAACTC
TGAACATCAAGCCTGTCGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDQLSAMRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYYERAAQIISELEELD
GSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPDIRIDLGVGDRTVDYLAENVDCALRGGTPADQSLIARRVSE
VEMITCASPNYIQKFGMPERPEDLEADHYSVNYFRAQNNRTLPFEFRRHNEVIETSPRYIASVNDSRTYLTAALTGLGIA
QVPIFMAREPMAKGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWLVKLLVEARLNDL

Sequences:

>Translated_303_residues
MDQLSAMRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYYERAAQIISELEELD
GSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPDIRIDLGVGDRTVDYLAENVDCALRGGTPADQSLIARRVSE
VEMITCASPNYIQKFGMPERPEDLEADHYSVNYFRAQNNRTLPFEFRRHNEVIETSPRYIASVNDSRTYLTAALTGLGIA
QVPIFMAREPMAKGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWLVKLLVEARLNDL
>Mature_303_residues
MDQLSAMRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTTDGALYYERAAQIISELEELD
GSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPDIRIDLGVGDRTVDYLAENVDCALRGGTPADQSLIARRVSE
VEMITCASPNYIQKFGMPERPEDLEADHYSVNYFRAQNNRTLPFEFRRHNEVIETSPRYIASVNDSRTYLTAALTGLGIA
QVPIFMAREPMAKGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWLVKLLVEARLNDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=41.0774410774411, Blast_Score=238, Evalue=3e-64,
Organism=Escherichia coli, GI1789639, Length=306, Percent_Identity=30.0653594771242, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=31.3588850174216, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=32.5657894736842, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=27.3356401384083, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=27.719298245614, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=26.1168384879725, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789173, Length=292, Percent_Identity=27.7397260273973, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1786448, Length=296, Percent_Identity=23.6486486486486, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=23.448275862069, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=293, Percent_Identity=24.5733788395904, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=31.0344827586207, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34411; Mature: 34411

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLSAMRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTT
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
DGALYYERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPD
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC
IRIDLGVGDRTVDYLAENVDCALRGGTPADQSLIARRVSEVEMITCASPNYIQKFGMPER
EEEEECCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHEEEEECCCHHHHHCCCCCC
PEDLEADHYSVNYFRAQNNRTLPFEFRRHNEVIETSPRYIASVNDSRTYLTAALTGLGIA
CCCCCCCCEEEEEEEECCCCCCCCHHHCCCCHHHCCCCEEEECCCCHHHHHHHHHHCCHH
QVPIFMAREPMAKGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWLVKLLVEARL
HHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
NDL
CCC
>Mature Secondary Structure
MDQLSAMRVFIRVVETGNFTRAADMLAMPKATVTNLIQGLEAHLRTKLLNRTTRRVMVTT
CCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
DGALYYERAAQIISELEELDGSLSNSQSLPSGRLRVEMAGAFADWIVVPALCDFYQRYPD
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC
IRIDLGVGDRTVDYLAENVDCALRGGTPADQSLIARRVSEVEMITCASPNYIQKFGMPER
EEEEECCCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHEEEEECCCHHHHHCCCCCC
PEDLEADHYSVNYFRAQNNRTLPFEFRRHNEVIETSPRYIASVNDSRTYLTAALTGLGIA
CCCCCCCCEEEEEEEECCCCCCCCHHHCCCCHHHCCCCEEEECCCCHHHHHHHHHHCCHH
QVPIFMAREPMAKGELVRVLPDWRRDPLPLYVVYPPNRHLSNKVRVFVDWLVKLLVEARL
HHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
NDL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]