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The map label for this gene is yhjC [H]

Identifier: 209550676

GI number: 209550676

Start: 3167259

End: 3168167

Strand: Direct

Name: yhjC [H]

Synonym: Rleg2_3100

Alternate gene names: 209550676

Gene position: 3167259-3168167 (Clockwise)

Preceding gene: 209550674

Following gene: 209550677

Centisome position: 69.79

GC content: 62.93

Gene sequence:

>909_bases
ATGGACAAATTCGATGCCATGCGGGTGTTTTGCCGCGTCGTGGAACGCCGCAGTTTCACGCTTGCCGCCGAAGACACCGG
CCTGCCGCGCTCCACCGTCACCGATGCGGTGAAGCAGCTTGAGGCTCGCCTGGGTGTGCGCCTGCTCCAGCGCACGACAC
GCCATGTCAGCCCGACGCTCGACGGCGAAGCCTATTACCAGCGCTGCCTGTCGATCCTTGCCGATATCGAGGATGCCGAA
GGTGCCTTTGCCGGCGCCAGGCCGAAGGGTCTGCTGCGCGTCGATGTGCATGGCACCCTCGCCCGCCATTTCCTGCTGCC
GAGCCTGCCGTCTTTTCTTCAGACCTATCCCGAGATCGAGTTCTACATGAGCGAAGGCGACCGGCTGGTCGATCTGGTGC
GCGAAGGCATCGACTGCGTGCTGCGCGGCGGCACGACCGGGGATAGCGACATGATCATCAGACGCGTTGCCATGCTGGAT
GAGATCACGCTCGCCTCGCCTGACTATGTCGCCGCCCATGGGCTGCCGCAGCATCCGGACCGGCTTGCCGGCCACCGCAT
GATCGGTTTCCGCTCCAGCGGCACTGGAAGCCAGTTGCCGCTCGAATTCACCGTCGACGGCGTGGTTCGTGAGATCAGCA
TTCCCGCCACCGTCGCCGTCAACGCCGCCGAAAGCTATATTTCAGCAGCGAGGATGGGCCTCGGCATCATCCAGATCCCG
CGCTATCACGCCGAAAAAGATCTTGCCGAGGGAACGCTGATCCATGTGCTCAAGGATTTTCCGCCGACCCCGACACCGGT
CTCCGTGCTCTACCCTCGCAATCGCCAGCTTTCGCCGCGGGTGCGCGTCTTCATCGACTGGCTGGTGACGGTCTTCGCTC
GACAAAAGTCGGAAAACGCGCTTTGCTAA

Upstream 100 bases:

>100_bases
TTTCCTTCATCGCGTTTCGATGAGGAGAAGCTATGCCTTTTCCCTTCGCGGATAATCAGGCATTATTCGCCATCACTATC
CGGAGATAGCGAACAAAGAG

Downstream 100 bases:

>100_bases
TATGAGCGCTTGGGGGAACGACGATGGCACTCAACGATATCACCGTCTACCAGACGGAAGATGGCTTCGTCGTCGAGTTT
GGTGGCGAAGGCGAAGACCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDKFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGEAYYQRCLSILADIEDAE
GAFAGARPKGLLRVDVHGTLARHFLLPSLPSFLQTYPEIEFYMSEGDRLVDLVREGIDCVLRGGTTGDSDMIIRRVAMLD
EITLASPDYVAAHGLPQHPDRLAGHRMIGFRSSGTGSQLPLEFTVDGVVREISIPATVAVNAAESYISAARMGLGIIQIP
RYHAEKDLAEGTLIHVLKDFPPTPTPVSVLYPRNRQLSPRVRVFIDWLVTVFARQKSENALC

Sequences:

>Translated_302_residues
MDKFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGEAYYQRCLSILADIEDAE
GAFAGARPKGLLRVDVHGTLARHFLLPSLPSFLQTYPEIEFYMSEGDRLVDLVREGIDCVLRGGTTGDSDMIIRRVAMLD
EITLASPDYVAAHGLPQHPDRLAGHRMIGFRSSGTGSQLPLEFTVDGVVREISIPATVAVNAAESYISAARMGLGIIQIP
RYHAEKDLAEGTLIHVLKDFPPTPTPVSVLYPRNRQLSPRVRVFIDWLVTVFARQKSENALC
>Mature_302_residues
MDKFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTLDGEAYYQRCLSILADIEDAE
GAFAGARPKGLLRVDVHGTLARHFLLPSLPSFLQTYPEIEFYMSEGDRLVDLVREGIDCVLRGGTTGDSDMIIRRVAMLD
EITLASPDYVAAHGLPQHPDRLAGHRMIGFRSSGTGSQLPLEFTVDGVVREISIPATVAVNAAESYISAARMGLGIIQIP
RYHAEKDLAEGTLIHVLKDFPPTPTPVSVLYPRNRQLSPRVRVFIDWLVTVFARQKSENALC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=38.8513513513513, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=34.4947735191638, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=30.4195804195804, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787589, Length=284, Percent_Identity=31.6901408450704, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=28.5714285714286, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=28.9115646258503, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789440, Length=293, Percent_Identity=23.2081911262799, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788706, Length=289, Percent_Identity=23.8754325259516, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789173, Length=185, Percent_Identity=26.4864864864865, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788481, Length=285, Percent_Identity=25.9649122807018, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33471; Mature: 33471

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTL
CCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGEAYYQRCLSILADIEDAEGAFAGARPKGLLRVDVHGTLARHFLLPSLPSFLQTYPEIE
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHCCCEE
FYMSEGDRLVDLVREGIDCVLRGGTTGDSDMIIRRVAMLDEITLASPDYVAAHGLPQHPD
EEECCCHHHHHHHHHCHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCH
RLAGHRMIGFRSSGTGSQLPLEFTVDGVVREISIPATVAVNAAESYISAARMGLGIIQIP
HHCCCEEEEEECCCCCCCCCEEEEHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCEEECC
RYHAEKDLAEGTLIHVLKDFPPTPTPVSVLYPRNRQLSPRVRVFIDWLVTVFARQKSENA
CHHHHHHHHCCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCC
LC
CC
>Mature Secondary Structure
MDKFDAMRVFCRVVERRSFTLAAEDTGLPRSTVTDAVKQLEARLGVRLLQRTTRHVSPTL
CCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGEAYYQRCLSILADIEDAEGAFAGARPKGLLRVDVHGTLARHFLLPSLPSFLQTYPEIE
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHCCCEE
FYMSEGDRLVDLVREGIDCVLRGGTTGDSDMIIRRVAMLDEITLASPDYVAAHGLPQHPD
EEECCCHHHHHHHHHCHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCH
RLAGHRMIGFRSSGTGSQLPLEFTVDGVVREISIPATVAVNAAESYISAARMGLGIIQIP
HHCCCEEEEEECCCCCCCCCEEEEHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCEEECC
RYHAEKDLAEGTLIHVLKDFPPTPTPVSVLYPRNRQLSPRVRVFIDWLVTVFARQKSENA
CHHHHHHHHCCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCC
LC
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]